Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f06
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 38 0.009
09_06_0069 + 20668500-20668622,20669270-20669521 29 3.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 28 5.6
06_03_0360 - 19876300-19876797 28 5.6
12_01_1061 + 10964571-10964927,10965393-10965425,10965865-109659... 28 7.5
10_05_0071 - 8801918-8802235,8802335-8802488,8802701-8802938,880... 28 7.5
03_04_0191 - 18293842-18294273 28 7.5
06_03_0854 + 25400855-25403741,25406174-25407708 27 9.9
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708... 27 9.9
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Frame = +2
Query: 152 IKKDLDGKLTHLVSSHV-EGSLNVITLLLTGRATPYLHNGILYVGDEDHYAMPQYGVLSR 328
I+ D D LV++ S V+ LLL G A + +G + G M G+ +
Sbjct: 329 IQADRDDPSLPLVTAPFGHASQEVVNLLLCGEAVSNVFDGKVDFGG----GMFLNGIPND 384
Query: 329 SPVGLLVWYGGEESSKVNVNKQYPGSRLKTPALPIWITSCSGHYGVLFNTNRELLRNYHA 508
VG L KV G LK P PIW+ HY VLF N +
Sbjct: 385 VEVGFLTLLESLNFCKV-------GQYLKCPKWPIWVVGSESHYSVLFALNPNVQEENEL 437
Query: 509 ERR 517
E R
Sbjct: 438 EER 440
>09_06_0069 + 20668500-20668622,20669270-20669521
Length = 124
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 281 GDEDHYAMPQYGVLSRSPVGLLVWYGGEESSKVNVNKQYPGSRLKTPALPIW 436
GD P +L GL VW GE ++ +N RL PA+ +W
Sbjct: 59 GDASDEENPSSFLLPGQTHGLQVWNDGEPNNPLNPTLTCASVRLWAPAVRLW 110
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 655 LGKDKFLQRCSRDVIGPHGRSGVVMGSRVHVEEDMTSAACVVVDVETSFSVI 500
+G+ F+Q ++ +I P R G+V G RVH + + C++ E ++
Sbjct: 467 VGERYFMQLINKSMIQPMERYGIVNGCRVH--DMVLDLICILATKENFVKIL 516
>06_03_0360 - 19876300-19876797
Length = 165
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 335 VGLLVWYGGEESSKVNVNKQYPGSRLKTPALPIWIT 442
+G VWY GE ++ V + + + +K+ L IW++
Sbjct: 74 IGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVS 109
>12_01_1061 +
10964571-10964927,10965393-10965425,10965865-10965909,
10966209-10966220
Length = 148
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 504 TLKDVSTSTTTHAADVMSSSTWTREPMTTPLRPCGP--MTSRLHLWRNLSL 650
T V+ +T T AA V ++ T T M T P ++ RLH WR+ L
Sbjct: 54 TTATVAATTMTTAATVAATMTMTATVMKTTSGLLQPRHLSGRLHRWRHQRL 104
>10_05_0071 -
8801918-8802235,8802335-8802488,8802701-8802938,
8803109-8803319,8803391-8803515,8808503-8808622,
8808728-8809586
Length = 674
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 LIHPRPKALS-LSDTA*VDEVIGFGIKKDLDGKLTHLVSSHVEGSL 214
+IH KA + L D++ ++ FG+ + DG T V+SHV G+L
Sbjct: 473 IIHRDLKASNVLLDSSMNPKISDFGLARLFDGNKTASVTSHVVGTL 518
>03_04_0191 - 18293842-18294273
Length = 143
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 165 KSFLMPKPMTSSTYAVSLRDKALG-RGWIRNSDNGK 61
K F P P+T + + +A G RGWIR + G+
Sbjct: 57 KHFAPPAPVTPPPHPQPQQQQATGGRGWIRRREQGR 92
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 177 SLPSKSFLMPKPMTSSTYAVSLRDKALGRG 88
SL + L P P T +T + S R+ LGRG
Sbjct: 1058 SLAALEALAPPPATPATLSASSREHGLGRG 1087
>04_03_0217 -
12769956-12770252,12770340-12770490,12770572-12770803,
12770979-12771040,12771189-12771235,12771313-12771431,
12771513-12771671,12771745-12771925,12772010-12772361,
12772673-12772717,12772789-12772854,12772951-12773016,
12773107-12773178,12773283-12773357,12773437-12773508,
12774169-12774240,12774499-12774570,12776252-12776323,
12776400-12776471,12776811-12776997,12778343-12778457
Length = 861
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 38 ICDGLRYGFP-LSLFLIHPRPKALS-LSDTA*VDEVIGFGIKKDLDGKLTHLVSSHVEGS 211
I GL Y S+ ++H KA + L DT ++ FG+ K D K TH VS+ + G+
Sbjct: 654 IASGLTYLHEESSVRIVHRDIKASNVLLDTDLTPKISDFGLAKLYDEKQTH-VSTRIAGT 712
Query: 212 LNVI 223
L +
Sbjct: 713 LGYL 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,699,621
Number of Sequences: 37544
Number of extensions: 493719
Number of successful extensions: 1238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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