Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f06
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29493| Best HMM Match : PH (HMM E-Value=0.48)                       31   1.1  
SB_4592| Best HMM Match : Ribosomal_S30AE (HMM E-Value=2.6)            28   5.8  
SB_59582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_54847| Best HMM Match : Peptidase_S24 (HMM E-Value=1.6)             28   7.6  
SB_19300| Best HMM Match : Peptidase_S24 (HMM E-Value=1.9)             28   7.6  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           28   7.6  
SB_45892| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_29493| Best HMM Match : PH (HMM E-Value=0.48)
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 150 PKPMTSSTYAVSLRDKALGRGWIRNSDNGKP*RRPSHMRVPSRSR 16
           P+   S T  VS R     R W+R S  G    RP    VPS SR
Sbjct: 362 PQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSR 406



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 150 PKPMTSSTYAVSLRDKALGRGWIRNSDNGKP*RRPSHMRVPSRSR 16
           P+   S T  VS R     R W+R S  G    RP    VPS SR
Sbjct: 694 PQRSESQTEGVSSRPNFFKRTWLRISKRGPKRPRPRSRSVPSLSR 738


>SB_4592| Best HMM Match : Ribosomal_S30AE (HMM E-Value=2.6)
          Length = 552

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 152 IKKDLDGKLTHLVSSHVEGSLN-VITLLLTGRATPYL 259
           + K L+G +T +++ H+EGS+  ++T  L G  T +L
Sbjct: 202 LTKHLEGSVTWILTKHLEGSVTWILTKHLEGSVTWFL 238


>SB_59582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 287 EDHYAMPQYGVLSRSPVGLLVWYGGEESSKVNVNKQY 397
           +D Y   QYGVL R  + L   YG  +   + + KQY
Sbjct: 246 DDLYLAKQYGVLDRDDLYLAKQYGVLDGDDLYLAKQY 282


>SB_54847| Best HMM Match : Peptidase_S24 (HMM E-Value=1.6)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 287 EDHYAMPQYGVLSRSPVGLLVWYGGEESSKVNVNKQY 397
           +D Y   QYGVL R  + L   YG  +   + + KQY
Sbjct: 76  DDLYLAKQYGVLDRDDLYLAKQYGVLDGDDLYLAKQY 112


>SB_19300| Best HMM Match : Peptidase_S24 (HMM E-Value=1.9)
          Length = 218

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 230 LLTGRATPYLHNGILYVGDEDHYAMPQYGVLSRSPVGLLVWYGGEESSKVNVNKQY 397
           L+  R   YL      +  +D Y   QYGVL    + L+  YG  +   + + KQY
Sbjct: 122 LILDRDDLYLAKQYKVLDGDDLYLAKQYGVLDGDDLYLVKQYGVLDGDDLYLAKQY 177


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -2

Query: 477 VLNSTP*CPEQLVIHIGKAGVFNLDPGYCLFTLTFELSSPPYQTRRPTGLRESTPYC 307
           V NSTP         +        +P Y +   T+ +S+P Y+   PT    S  +C
Sbjct: 325 VSNSTPRVSNNPTYRVSNPNYRVSNPKYRVSNPTYRVSNPTYRVSNPTHEMSSPTHC 381


>SB_45892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 SSVLASKKIWMVN*PILCHRMWRDH 212
           SS L  + +  VN P  CHR W+D+
Sbjct: 9   SSYLRKRMLRWVNQPYPCHRTWKDN 33



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 SSVLASKKIWMVN*PILCHRMWRDH 212
           SS L  + +  VN P  CHR W+D+
Sbjct: 44  SSYLRKRMLRWVNQPYPCHRTWKDN 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,524,792
Number of Sequences: 59808
Number of extensions: 559097
Number of successful extensions: 1925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)