Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f06
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.0  
AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical...    28   5.0  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    27   8.8  
L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein regul...    27   8.8  

>U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical
           protein K06A1.3 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 513 DVSTSTTTHAADVMSSSTWTREPMTTPLRPCGPMTSRLHLWRNLSLP 653
           ++ ++TTT      S++T T  P TT  RP   +T  L     ++LP
Sbjct: 299 EIPSTTTTSTTTTTSTTTATETPTTTTERPTTTVTQVLDPTTTVTLP 345


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 26  DGTLICDGLRYGFPLSLFLIHPRPKALSLSDTA*VDEV--IGFGIKKDLDGKLTHLVSSH 199
           + +L  D L++G  +  F +H +    ++S    + ++  + F +KK LDGK T   +  
Sbjct: 541 NSSLASDVLKFGSNIRAFGVHAKNDKATISFLDLISKLQNLYFSVKKSLDGKRTRRATGS 600

Query: 200 VE 205
           ++
Sbjct: 601 ID 602


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 453 DTTAYYLTQTVNY*GIITLKDVSTSTTTHAADVMSSSTWTREPMTT 590
           D T    T T       T ++ STSTTT      SS+  T EP TT
Sbjct: 386 DETTTSTTFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTT 431


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 453 DTTAYYLTQTVNY*GIITLKDVSTSTTTHAADVMSSSTWTREPMTT 590
           D T    T T       T ++ STSTTT      SS+  T EP TT
Sbjct: 386 DETTTSTTFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTT 431


>AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical
           protein Y57A10A.11 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 447 APDTTAYYLTQTVNY*GIITLKDVSTSTTTHAADVMSSSTWTREPMTT 590
           AP TT    T T       T    +TSTTT  A   + +T TR P TT
Sbjct: 126 APTTTTKKTTTTT------TTTTTTTSTTTTEAPTTTKTTTTRRPSTT 167


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525 STTTHAADVMSSSTWTREPMTT-PLRPCGPMT 617
           STTT  A   +S+T T EP+TT P +   P+T
Sbjct: 275 STTTTTASPKTSTTLTPEPITTVPAKDVKPVT 306


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 474 TQTVNY*GIITLKDVSTSTTTHAADVMSSSTWTREPMTTP 593
           T TV+    +T    +T+TTT      + +T T  P TTP
Sbjct: 248 TTTVSTTSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTP 287


>L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein
           regulator protein 1 protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 240 PVRSRVITFSDPSTCDDTRWVSLPSKSFLMPKPMTSST 127
           PV    + FS  S  DD R   LP+  F+ P+P++S++
Sbjct: 424 PVDMMDLIFSMSSRMDDQR-TELPAARFIPPRPVSSAS 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,441
Number of Sequences: 27780
Number of extensions: 393254
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)