Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f06
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = -2

Query: 453 PEQLVIHIGKAGVFNLDPGYCLFTLTFELSSPPYQTRRPTGLRESTPYCGI 301
           P+ ++I  G    F ++    LF +  +      +   P G ++++ YCG+
Sbjct: 584 PQHMLIPKGNKEGFAME----LFVMVSDYKDDRVEQNEPIGCKDASSYCGL 630



 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 260 HNGILYVGDEDHYAMPQYGVLSRSPVGL 343
           H  I Y+ D DH  +  +GV+  S   +
Sbjct: 369 HVAISYIHDPDHRYLESFGVMGDSATAM 396


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 527 GCRNVFQRDNSSVVHGLC*IVRRSVRSNW 441
           GCR  FQ DN S+  G   I    +  NW
Sbjct: 411 GCRTPFQWDN-SINAGFSKIAENLLEKNW 438


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 498 IITLKDVSTSTTTHAADVMSSSTWTREPMTTP 593
           ++ L  +  ++ T+AAD+  + TW    +  P
Sbjct: 69  VMGLDSIDENSMTYAADIFFAQTWKDNRLRLP 100


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 222 ITFSDPSTCDDTRWVSLPSKSFLMP 148
           I   D   C+D R +S+P K   +P
Sbjct: 348 IDILDDVKCEDERVISIPDKEITVP 372


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 340 PPRLVWRRRKLEGQCEQAIPWIQIENSGFTYM 435
           PP LVWRR   + +     P I++ N G  Y+
Sbjct: 339 PPPLVWRRNGADLETLNE-PEIRVFNDGSLYL 369


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 412 QSGSRVLLVHIDLRAFFSSI 353
           +SGS V+ V +DL  F+ S+
Sbjct: 189 KSGSNVVDVGVDLSEFYMSV 208


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 412 QSGSRVLLVHIDLRAFFSSI 353
           +SGS V+ V +DL  F+ S+
Sbjct: 189 KSGSNVVDVGVDLSEFYMSV 208


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 527  HYYTCGGCHVLLNV-DTRAHDDTTAAMRTD 613
            H+Y CG C +  +V  T  H   T    TD
Sbjct: 1068 HFYVCGDCTMAEDVYQTLKHIIQTHGEMTD 1097


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/32 (15%), Positives = 17/32 (53%)
 Frame = +3

Query: 498 IITLKDVSTSTTTHAADVMSSSTWTREPMTTP 593
           ++++  ++  + T+ AD+  + +W    +  P
Sbjct: 38  VLSIDSINEESMTYVADIFLAQSWRDSRLRLP 69


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 402 PGYCLFTLTFELSSPPYQTRRP 337
           P YCLF  T  L+S    T  P
Sbjct: 529 PRYCLFGNTVNLTSRTETTGEP 550


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 549 VMSSSTWTREPMTT 590
           V+SSST T  PMT+
Sbjct: 322 VLSSSTTTTSPMTS 335


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 214 ERYYSTSDGKSHAIFTQWHSLCRR*RPLCYATIWRTLPESGWPPRLVWRRRKLEGQCEQA 393
           +RY++ +D      FT    + RR   +  A +W       +P  + WR  + E   E  
Sbjct: 143 DRYWAITDP-----FTYPSKMSRRRAAVLIAIVWICSSAISFPAIVWWRAVRTEEVPEDK 197

Query: 394 IPWIQ 408
            P+ +
Sbjct: 198 CPFTE 202


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 402 PGYCLFTLTFELSSPPYQTRRP 337
           P YCLF  T  L+S    T  P
Sbjct: 529 PRYCLFGNTVNLTSRTETTGEP 550


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 498 IITLKDVSTSTTTHAADVMSSSTWTREPMTTP 593
           I T+   +T+TTT      + +T      TTP
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTP 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,889
Number of Sequences: 438
Number of extensions: 4724
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)