Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f05
         (157 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGJ9 Cluster: Ribosomal protein 3; n=1; Lonomia obliq...    56   1e-07
UniRef50_UPI00006CAF49 Cluster: Ribosomal protein S27a containin...    31   3.7  
UniRef50_P62979 Cluster: 40S ribosomal protein S27a; n=188; root...    30   8.5  

>UniRef50_Q5MGJ9 Cluster: Ribosomal protein 3; n=1; Lonomia
           obliqua|Rep: Ribosomal protein 3 - Lonomia obliqua
           (Moth)
          Length = 42

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   DRHYCGKCHSTMVFKDDDK*ISPL*PVRNARDCCV 106
           DRHYCGKCHSTMVFKDDD  +SPL  ++++R  C+
Sbjct: 6   DRHYCGKCHSTMVFKDDDNRLSPL-SLKDSRPLCM 39


>UniRef50_UPI00006CAF49 Cluster: Ribosomal protein S27a containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal protein S27a containing protein - Tetrahymena
           thermophila SB210
          Length = 189

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 2   DRHYCGKCHSTM 37
           DRHYCGKCH T+
Sbjct: 130 DRHYCGKCHLTL 141


>UniRef50_P62979 Cluster: 40S ribosomal protein S27a; n=188;
           root|Rep: 40S ribosomal protein S27a - Homo sapiens
           (Human)
          Length = 80

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 2   DRHYCGKCHSTMVF-KDDDK 58
           DRHYCGKC  T  F K +DK
Sbjct: 61  DRHYCGKCCLTYCFNKPEDK 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,687,725
Number of Sequences: 1657284
Number of extensions: 1855273
Number of successful extensions: 4130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4130
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)