Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f05
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   0.11 
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    26   0.77 
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    26   0.77 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   2.4  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    23   4.1  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    23   7.2  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    22   9.5  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 115 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 11
           NP+YT      Y L  TYL    F++HR  +  AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 2   DRHYCGKCHSTM 37
           DR YCG+CH T+
Sbjct: 135 DRLYCGRCHLTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 2   DRHYCGKCHSTM 37
           DR YCG+CH T+
Sbjct: 135 DRLYCGRCHLTL 146


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 144  LRHCVKILFKIHHTQQSRAFLTG*RGLIYLSSSLKTIV 31
            +  C+++ F+  + Q+ R FL   +  I   S  KT+V
Sbjct: 1603 IEDCIRMFFENGNHQELRKFLNFPKDSIIYDSDFKTLV 1640


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 152 FLSSDTVSRFYLKSIIHSSRERS--LQARGDLFICRR 48
           F +SDT  RFY++ + +     S  +    D  IC+R
Sbjct: 36  FFNSDTNERFYVRGVDYQPGGSSTLVDPLADTSICKR 72


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 5  RHYCGKCHSTMVFKD 49
          ++ C +CHS + FKD
Sbjct: 2  QYLCQRCHSLINFKD 16


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 122 YLKSIIHSSRERSLQARGDLF 60
           YL+S+  S+ E+S+Q   DLF
Sbjct: 512 YLRSVSISNPEKSVQFLRDLF 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,962
Number of Sequences: 5004
Number of extensions: 8465
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)