Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f05
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0438 + 3475017-3475484                                           29   0.51 
01_03_0108 - 12628711-12629178                                         29   0.51 
02_04_0439 - 22950649-22950760,22951035-22951347,22951462-229514...    27   2.7  
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436...    25   6.3  

>05_01_0438 + 3475017-3475484
          Length = 155

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 2   DRHYCGKCHSTMVF 43
           DRHYCGKC  T V+
Sbjct: 138 DRHYCGKCGLTYVY 151


>01_03_0108 - 12628711-12629178
          Length = 155

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 2   DRHYCGKCHSTMVF 43
           DRHYCGKC  T V+
Sbjct: 138 DRHYCGKCGLTYVY 151


>02_04_0439 -
           22950649-22950760,22951035-22951347,22951462-22951465,
           22951756-22952114,22952717-22952813
          Length = 294

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 89  RSLQARGDLFICRRL*RPSCCDTSRS 12
           R+ + R DL +CR   + +CCD S++
Sbjct: 58  RAAKGRRDLALCRVFRQNTCCDVSQT 83


>07_03_1777 +
           29442542-29442652,29443394-29443455,29443540-29443681,
           29444043-29444261,29444374-29444440,29444883-29445288,
           29445669-29445816,29445903-29446063,29446320-29446419,
           29446522-29446596,29446677-29446811,29446921-29447013,
           29447475-29447657,29447738-29447842,29448614-29448772,
           29449142-29449186,29449296-29449517,29449775-29449881,
           29449971-29450027,29450132-29450213,29450291-29450455
          Length = 947

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 61  LFVVVFEDHRAVTLPAVVTV 2
           LF+V+FE++R    P VV++
Sbjct: 375 LFIVIFENYREQLAPVVVSI 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,935,922
Number of Sequences: 37544
Number of extensions: 51664
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)