Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f05
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16530-1|AAA28161.1|  163|Caenorhabditis elegans ubiquitin-like:...    31   0.15 
AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-lik...    31   0.15 
Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>L16530-1|AAA28161.1|  163|Caenorhabditis elegans
           ubiquitin-like:ribosomal proteinfusion protein protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   DRHYCGKCHSTMV 40
           +RHYCG+CH T+V
Sbjct: 131 NRHYCGRCHDTLV 143


>AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-like
           family protein 1,isoform a protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   DRHYCGKCHSTMV 40
           +RHYCG+CH T+V
Sbjct: 131 NRHYCGRCHDTLV 143


>Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 122 YLKSIIHSSRERSLQARGDLFICRRL-*RPSC 30
           Y K +     + +LQ R DL  CRR+  RPSC
Sbjct: 137 YRKCLESGMSKEALQPRRDLIGCRRIRSRPSC 168


>Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 122 YLKSIIHSSRERSLQARGDLFICRRL-*RPSC 30
           Y K +     + +LQ R DL  CRR+  RPSC
Sbjct: 137 YRKCLESGMSKEALQPRRDLIGCRRIRSRPSC 168


>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 8   HYCGKCHSTMVFKDD 52
           H C +CH T +FK D
Sbjct: 123 HECPQCHKTFIFKFD 137


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 8   HYCGKCHSTMVFKDD 52
           H C +CH T +FK D
Sbjct: 172 HECPQCHKTFIFKFD 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,330
Number of Sequences: 27780
Number of extensions: 47897
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)