Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f05
         (157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   2.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   7.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    18   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    18   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 36  WSSKTTTNK*VPSSL*GTLATAVYD 110
           WSSKT TN  V  S+   +    YD
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYD 246


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 155 FFLSSDTVSRFYLKSIIHSSRERS 84
           FFL    ++R+YL+ + +   E S
Sbjct: 259 FFLHKQVLNRYYLERLSNDMGEVS 282


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 155 FFLSSDTVSRFYLKSIIHSSRERS 84
           FFL    ++R+YL+ + +   E S
Sbjct: 259 FFLHKQVLNRYYLERLSNDMGEVS 282


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 7   SLLREVSQHDGLQRRRQINKSPLACKERSRLLCMMD 114
           S L +V++ + L R           +  + L CMMD
Sbjct: 129 SFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMD 164


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 129 KILFKIHHTQQSRAFLTG 76
           KI  K+HHT  S +   G
Sbjct: 406 KINRKVHHTTSSSSAAGG 423


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 95  DCCV*WILN 121
           +CCV WI +
Sbjct: 75  NCCVIWIFS 83


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +2

Query: 95  DCCV*WILN 121
           +CCV WI +
Sbjct: 75  NCCVIWIFS 83


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 143 SDTVSRFYLKSIIHSSRERSLQARGDLFICRRL 45
           ++ +SR +  S   + R   +  R  L IC  L
Sbjct: 743 TNRISRIFNASKHSAKRPSFISPRSQLIICSGL 775


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   TVTTAGSVTARWSSKTTT 56
           T+TT  + T   ++ TTT
Sbjct: 660 TITTTTTTTTTTTTTTTT 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,919
Number of Sequences: 438
Number of extensions: 492
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)