Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q20C74 Cluster: Dvir_CG32016; n=1; Drosophila virilis|R...    32   2.2  
UniRef50_Q38DC9 Cluster: Putative uncharacterized protein; n=3; ...    31   5.0  

>UniRef50_Q20C74 Cluster: Dvir_CG32016; n=1; Drosophila virilis|Rep:
            Dvir_CG32016 - Drosophila virilis (Fruit fly)
          Length = 1054

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 114  HYLNQVHKRSDSPRYKLIDGGLHR 43
            HY+ Q  +RS  PR++L+ G +HR
Sbjct: 940  HYIQQQQQRSQPPRHRLLHGDMHR 963


>UniRef50_Q38DC9 Cluster: Putative uncharacterized protein; n=3;
           Trypanosoma|Rep: Putative uncharacterized protein -
           Trypanosoma brucei
          Length = 586

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 114 HYLNQVHKRSDSPRYKLIDGGLHRP--ATTTGL 22
           H L+++HKR  +PR+ L+  G  +P  AT TG+
Sbjct: 160 HLLHELHKRGYTPRHLLVREGQQKPKWATNTGV 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,292,231
Number of Sequences: 1657284
Number of extensions: 1080472
Number of successful extensions: 3511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 575,637,011
effective HSP length: 21
effective length of database: 540,834,047
effective search space used: 10275846893
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)