Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   1.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   1.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   1.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    19   3.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   3.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 21  VSRWWWRAGVSRH 59
           VS  WW   +SRH
Sbjct: 263 VSLGWWENYISRH 275


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 21  VSRWWWRAGVSRH 59
           VS  WW   +SRH
Sbjct: 263 VSLGWWENYISRH 275


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 21  VSRWWWRAGVSRH 59
           VS  WW   +SRH
Sbjct: 263 VSLGWWENYISRH 275


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 21  VSRWWWRAGVSRH 59
           VS  WW   +SRH
Sbjct: 263 VSLGWWENYISRH 275


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   GSPSLRGKPVVVAGRCKP 55
           G P    +P +VAG+ KP
Sbjct: 59  GPPRTPLQPKLVAGKLKP 76


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc
          finger protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +2

Query: 8  PSLRGKPV-VVAGRC 49
          PSLRG P+ ++A +C
Sbjct: 30 PSLRGTPLAMLAAQC 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,558
Number of Sequences: 336
Number of extensions: 298
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 21
effective length of database: 115,529
effective search space used:  2195051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)