Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   5.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    23   5.6  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    22   9.7  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 117 FHYLNQVHKRSDSPRYK 67
           FHYLN + K    P Y+
Sbjct: 79  FHYLNSIPKPEAEPDYR 95


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 123 FFFHYLNQVHKRSDSPRYKLIDGGLHRP 40
           ++F ++ Q    S+S R+ ++ G  H P
Sbjct: 484 YYFDWMAQEFNLSESDRFTMLSGIAHDP 511


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 120 FFHYLNQVHKRSDSPRYKLIDGGLHRPA 37
           F HY+N+   +    R  L+ G +H P+
Sbjct: 105 FVHYVNEFQDKKLPLRPTLLYGRMHLPS 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,245
Number of Sequences: 5004
Number of extensions: 4025
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)