Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1031 - 23389263-23389541                                         27   2.8  
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     26   4.9  
02_05_0520 - 29717989-29718264                                         26   4.9  

>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 18 GVSRWWWRAGVSR 56
          G++ WWWRA V R
Sbjct: 30 GLAAWWWRATVQR 42


>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 87  SDSPRYKLIDGGLHRPATTTGLPRNDG 7
           SD   ++L   G HRP   TG P +DG
Sbjct: 446 SDLVTFRLCIMGRHRPDRITGEPMDDG 472


>02_05_0520 - 29717989-29718264
          Length = 91

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 3  GVRHYGVSRWWWRAGVS 53
          G   YG SRWWW  G +
Sbjct: 22 GTESYG-SRWWWALGAT 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,713
Number of Sequences: 37544
Number of extensions: 30876
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)