Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)                 28   1.0  
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)                    26   4.1  
SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          25   7.2  
SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)                25   9.5  

>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
          Length = 1199

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 117 FHYLNQVHKRSDSPRYKL-IDGGLHRPATTTGLPRNDGLP 1
           FH  + +H+R DS RY + I   LHR  + + L R +  P
Sbjct: 180 FHTDHHIHRREDSQRYFMEIPPSLHRARSCSELDRVEPEP 219


>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
          Length = 514

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 78  PRYKLIDGGLHRPATTTGLPRND 10
           P  +L+ GG H   T  G PRN+
Sbjct: 290 PTQQLLPGGTHATTTPRGYPRNN 312


>SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 21  VSRWWWRAG 47
           V RWWWR G
Sbjct: 260 VKRWWWRVG 268


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 5   SPSLRGKPVVVAGR-CKPPSI 64
           SPSL G PVVV  R  +PP I
Sbjct: 75  SPSLTGDPVVVEDRYLRPPGI 95


>SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)
          Length = 543

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 120 FFHYLNQVHKRSDSPRYK 67
           FFHY N V   S +PRY+
Sbjct: 421 FFHYRNTVGLISGTPRYR 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,688
Number of Sequences: 59808
Number of extensions: 34140
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 21
effective length of database: 15,565,489
effective search space used: 295744291
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)