Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f02
         (124 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22831-15|ABA54420.1|  121|Caenorhabditis elegans Hypothetical p...    26   3.2  
AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical ...    26   4.3  

>U22831-15|ABA54420.1|  121|Caenorhabditis elegans Hypothetical
          protein F47D12.10 protein.
          Length = 121

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 15 YGVSRWWWRAGVSRHQ 62
          YG+S  WW  GVS +Q
Sbjct: 47 YGISMDWWAVGVSLYQ 62


>AC025716-7|AAK95888.1|  465|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.21 protein.
          Length = 465

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 78  PRYKLIDGGLHRPATTTGLPRNDGL 4
           P Y L+DGG   P    GL ++D L
Sbjct: 232 PSYWLLDGGSLLPVLALGLQKDDSL 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,437
Number of Sequences: 27780
Number of extensions: 27173
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 12,740,198
effective HSP length: 21
effective length of database: 12,156,818
effective search space used: 230979542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)