Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e20
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    23   4.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    23   4.2  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    23   4.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   4.2  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    23   5.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    23   7.4  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    22   9.7  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 ISKHGFRDNGGDVTAT 163
           + +HG R+  GDVTAT
Sbjct: 66  LQRHGSRNPTGDVTAT 81


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 165 PVAVTSPPLSRNP 127
           P A TS P+SRNP
Sbjct: 134 PSATTSSPISRNP 146


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 63  CITKYNVYKLFNA 101
           CI KYN Y++++A
Sbjct: 80  CILKYNTYQIYSA 92


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 163 SSGNISTIISESMFAYXTTVQAL 95
           SSG+IS I  + +FA+ T+++++
Sbjct: 414 SSGDISEIWLQHIFAHNTSIESI 436


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 131 IHVCLXYYRSSVK*FINIIFCYAK 60
           + V L YY++++   IN+I C  K
Sbjct: 96  VQVPLSYYKNNISGTINLIECMKK 119


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 152 HLHHYLGIHVCLXYYRSSVK*FINIIFC 69
           H ++Y G  +    Y SS+K +IN   C
Sbjct: 229 HSNYYAGFGLSYYLYLSSMKAYINSSGC 256


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +3

Query: 120 ANMDSEIMVEMLPLLGVCXLCLN 188
           +N+ S    + +P+  +C  CL+
Sbjct: 56  SNLQSNYKYDQVPMYSICVFCLS 78


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 18  DVCYVMSDRKFLTXFCITKYNV 83
           DVC V+   +FL  + +  YNV
Sbjct: 121 DVCAVLRVHRFLEQWGLINYNV 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,303
Number of Sequences: 5004
Number of extensions: 10152
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)