Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e20
         (195 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   0.58 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   1.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   1.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   5.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    18   9.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    18   9.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    18   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   9.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 0.58
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 97  TLER*XNKQTWIPR*WWRCYRY 162
           T+ER    + WIP+  WR + Y
Sbjct: 412 TMERQTQTEVWIPK--WRQFLY 431


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 66  ITKYNVYKLFNA*TVVX*-ANMDSEIMVEMLP 158
           IT Y +Y L  A ++V   AN+D +IM+ +LP
Sbjct: 70  ITCY-MYCLLEAFSLVDDEANVDEDIMLGLLP 100


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 66  ITKYNVYKLFNA*TVVX*-ANMDSEIMVEMLP 158
           IT Y +Y L  A ++V   AN+D +IM+ +LP
Sbjct: 70  ITCY-MYCLLEAFSLVDDEANVDEDIMLGLLP 100


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 169 TPSSGNISTIISES 128
           TP++ NIST I E+
Sbjct: 629 TPAAFNISTTIYEN 642


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 79  LYFVMQKXVKNFLSDI 32
           +YF +Q+ + NFL  +
Sbjct: 205 VYFHLQRHMGNFLIQV 220


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -2

Query: 140 YLGIHVCLXYYRSSV 96
           Y G+ +CL  + S++
Sbjct: 278 YYGVSICLVTFASAL 292


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -2

Query: 149 LHHYLGIHVCLXYYRSSVK*FINIIFCYA 63
           L+H +G  V +     + K  I +  C A
Sbjct: 3   LYHIVGASVLICLLNETAKAIIGVDECQA 31


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 66   ITKYNVY 86
            ITKYN+Y
Sbjct: 1244 ITKYNLY 1250


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 66   ITKYNVY 86
            ITKYN+Y
Sbjct: 1240 ITKYNLY 1246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,123
Number of Sequences: 438
Number of extensions: 754
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)