Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e19
         (443 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5U6G7 Cluster: Orf310 protein; n=2; Beta vulgaris subs...    33   2.8  
UniRef50_A6NWK5 Cluster: Putative uncharacterized protein; n=1; ...    32   6.4  

>UniRef50_Q5U6G7 Cluster: Orf310 protein; n=2; Beta vulgaris subsp.
           vulgaris|Rep: Orf310 protein - Beta vulgaris subsp.
           vulgaris
          Length = 310

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +2

Query: 122 NYIFIFFFLKNLIVFFYSRNH*QISFLGVXLII--------SKLFWTFWSLYGHSTSDSS 277
           ++I I FF   L +FFY R      FL +  ++        S LF T ++L G   + +S
Sbjct: 48  SFILILFFFICLCIFFYRRKGHFCLFLLIHFLLLLFSYFLRSFLFETLFTLVGGIVTATS 107

Query: 278 TLKHNTSGGA 307
            + HN S G+
Sbjct: 108 VIHHNVSSGS 117


>UniRef50_A6NWK5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 79

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 151 KPYCFFLFTESLTNLIFGSXXNYFKIILDILEFVRA-LNIRQFHPQTQHKRR 303
           KP+C+F+ + S   LI     +YF++  D + F R  LN ++ H +   K R
Sbjct: 18  KPFCYFIPSVSYPFLIHFISVSYFQLQGDWMRFERGLLNSQKLHAELHRKMR 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,103,463
Number of Sequences: 1657284
Number of extensions: 6244686
Number of successful extensions: 18102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18080
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)