Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e19
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    29   1.3  
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    28   3.9  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    28   3.9  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    27   5.1  
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024...    27   6.8  
02_02_0504 - 11014925-11014988,11015100-11015212,11015298-110153...    27   6.8  
01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140...    27   6.8  

>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 154 PYCFFLFTESLTNLIFGSXXNYFKIILDILEFVRALNIRQFHPQTQHK---RRGRL 312
           P  F LF ES+TN+ F    NY K+I    E +   ++R        K   +RGRL
Sbjct: 384 PPPFKLFLESVTNMRFDEEPNYAKLISLFDELIEPQHLRPIRIDGALKAGQKRGRL 439


>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 116 RCNYIFIFFFLKNLIVFFYS 175
           + N IF+FF L+ LI+ FYS
Sbjct: 485 KANLIFLFFLLRKLILPFYS 504


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 116 RCNYIFIFFFLKNLIVFFYS 175
           + N IF+FF L+ LI+ FYS
Sbjct: 500 KANLIFLFFLLRKLILPFYS 519


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 154  PYCFFLFTESLTNLIFGSXXNYFKIILDILE 246
            P C   F+ SL NL+  S  + FK +LD +E
Sbjct: 1106 PLCHMEFSSSLANLVLSS-VDRFKTMLDFIE 1135


>05_06_0038 -
           25100851-25101474,25101945-25102058,25102151-25102441,
           25102552-25102860,25103458-25104186
          Length = 688

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 122 NYIFIFFFLKNLIVFFYS 175
           N IF+FF L+ LI+ FYS
Sbjct: 489 NLIFLFFLLRKLILPFYS 506


>02_02_0504 -
           11014925-11014988,11015100-11015212,11015298-11015378,
           11015807-11015874,11016223-11016381,11016479-11016542,
           11016656-11016738,11017297-11017461,11017913-11017964
          Length = 282

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 229 ILDILEFVRALNIRQFHPQT 288
           ++D  EFVR+LNI  FHP+T
Sbjct: 150 VIDFGEFVRSLNI--FHPET 167


>01_06_0835 -
           32312264-32312884,32313529-32313642,32313739-32314029,
           32314135-32314443,32315194-32315931
          Length = 690

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 122 NYIFIFFFLKNLIVFFYS 175
           N IF+FF L+ LI+ FYS
Sbjct: 492 NLIFLFFLLRKLILPFYS 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,341
Number of Sequences: 37544
Number of extensions: 162053
Number of successful extensions: 393
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)