Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e19
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   8.1  
EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3 ...    27   8.1  
AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF039047-4|AAB94225.1|  224|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 222 QNYFG-HFGVCTGTQHQTVPPSNTTQAEGQTESWH 323
           QN FG HFG  +G   + +  +NT+ +  Q+ ++H
Sbjct: 135 QNNFGSHFGTGSGVNQRNITNTNTSSSNHQSSTFH 169


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 222 QNYFG-HFGVCTGTQHQTVPPSNTTQAEGQTESWH 323
           QN FG HFG  +G   + +  +NT+ +  Q+ ++H
Sbjct: 135 QNNFGSHFGTGSGVNQRNITNTNTSSSNHQSSTFH 169


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 131 KYNCISRSVCLDFVHFNVDCWCNFNVRAW 45
           KY  ++ SV ++F HF + CW N +   W
Sbjct: 150 KYTILAFSVIMEFYHFYMCCW-NISSNLW 177


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 28  TNILSYHARTLKLHQQSTLKCTKSRQTDLEMQLYFYFFLS*KPYCFFLFTESLT 189
           T IL    RT+K  + + LK T S Q+D + ++  +  ++      F+ +E LT
Sbjct: 220 TTILILQLRTIKKRKANLLKSTSSNQSDNKFKMILWLTIT------FMLSEGLT 267


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 34  ILSYHARTLKLHQQSTLKCTKSRQTD-LEMQL 126
           I+SY A +LK+ Q   LK  K ++TD  EM+L
Sbjct: 208 IISYTAISLKIGQSMILKGAKKQKTDNWEMEL 239


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +1

Query: 64  LHQQSTLKCTKSRQTDLE-MQLYFYFFL------S*KPYCFFLFTESLTNLIFGSXXN 216
           + ++ST+     RQ +L  ++L  Y FL      +  PY FF+F   + N+I G+  N
Sbjct: 58  IRRRSTINLGNQRQRNLRRIRLKVYNFLEKPLNAASAPYHFFIFGLVIANIILGAATN 115


>EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3
           protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 414 VLNVLGHFNAKLIVAVKIKLICCEXCDFLGS 322
           V++++ +FN K ++ VK +  CC  C +LGS
Sbjct: 101 VMHIVDNFN-KEVLTVKRERHCCGCCCWLGS 130


>AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical
           protein C04E12.7 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 414 VLNVLGHFNAKLIVAVKIKLICCEXCDFLGS 322
           V++++ +FN K ++ VK +  CC  C +LGS
Sbjct: 101 VMHIVDNFN-KEVLTVKRERHCCGCCCWLGS 130


>AF039047-4|AAB94225.1|  224|Caenorhabditis elegans Hypothetical
           protein K11D12.5 protein.
          Length = 224

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 137 FFFLKNLIVFFYSRNH*QISFLGVXLIISKLFWTFWSLYGHSTSDSSTLKHNT 295
           F FL   +V  + +      F  V  ++  L  +FW  +G+ T+D + +  N+
Sbjct: 17  FTFLPMFMVLDWHKRGTADGFSSVNFVLPMLVQSFWLRHGYMTNDQTNIIINS 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,060,674
Number of Sequences: 27780
Number of extensions: 163540
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)