Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e17
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   213   2e-56
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   213   2e-56
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.45 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.60 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   1.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   1.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   3.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   4.2  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   7.3  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.7  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.7  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  213 bits (519), Expect = 2e-56
 Identities = 96/171 (56%), Positives = 128/171 (74%)
 Frame = +3

Query: 36  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 215
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 216 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 395
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 396 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVXEARK 548
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR +   AR+
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQ 171


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  213 bits (519), Expect = 2e-56
 Identities = 96/171 (56%), Positives = 128/171 (74%)
 Frame = +3

Query: 36  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 215
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 216 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 395
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 396 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVXEARK 548
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR +   AR+
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQ 171


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 179 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 90
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 158 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 63
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 214 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 312
           ++V  K  K  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 6   LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 164
           +V VG +  ++ S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 131
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 475 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 383
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 96  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 242
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 243 RRKGR 257
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 150 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 266
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 291 WLYLFSYQSHSDDPFYVLLCFCGHERGS 208
           W     Y+S   D FY ++ F  H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 432 KNKRVLMEYIHRKKAEKART-KMLSDQAEARRNKVXEARK 548
           K   V+ +  HRK A  A     L+DQ++A +N+V + RK
Sbjct: 224 KGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRK 263


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 305 WHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILD 168
           ++  + C S  T   +    TC     +TSA +Y  RF+ D+   D
Sbjct: 297 YYAVVECDSVRTAKVI--YETCDGAEYETSANIYDLRFIPDDVTFD 340


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 515 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 405
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,474
Number of Sequences: 5004
Number of extensions: 45359
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)