Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e17
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   229   1e-60
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   2.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  229 bits (560), Expect = 1e-60
 Identities = 103/171 (60%), Positives = 133/171 (77%)
 Frame = +3

Query: 36  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 215
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 216 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 395
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 396 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVXEARK 548
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQA+ARR+K  E+RK
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRK 171


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 132  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 266
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 144 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 257
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 251 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 114
           ++T FC+FAD S   +  R  DD+  ++   +  SG  + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,453
Number of Sequences: 27780
Number of extensions: 271391
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)