Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e12
         (697 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.3  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    24   5.3  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   9.2  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 568 VSRIHHIVDD-ETEKVHGVPYGGKRVSKTLGLARTQIE 458
           ++R+H  ++D E+ ++    YG +R   T+GL +  +E
Sbjct: 508 LNRLHEFLEDPESPRLSDRQYGFRRGCSTIGLIQRVVE 545


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 493 LHVYHHMGHHALSQSH 540
           LH +HH GHHA   +H
Sbjct: 348 LH-HHHPGHHAALHAH 362


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 502 YHHMGHHALSQSHHRRYGVYARQKQSRFCHAAVEKR*RCY 621
           YH   H   SQ HH  +  +    Q +  H+A     RCY
Sbjct: 172 YHQQQHPGHSQHHHHHHHHHPHHSQQQ--HSASP---RCY 206


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,654
Number of Sequences: 2352
Number of extensions: 15886
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)