Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e12
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine rece...    30   1.8  
U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine rece...    30   1.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    29   2.4  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z70284-5|CAA94276.2|  470|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   9.7  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   9.7  

>U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine
           receptor, class t protein19 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 621 IAPSSFFNCCMTKSRLLLSRVYTISSMMRLRKCMVSHMV 505
           +A  S+  CC+    L + R+  +S  M ++KC   + +
Sbjct: 124 VALGSWMGCCIASMTLAVIRICDLSMQMNIKKCFAGNKI 162


>U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine
           receptor, class t protein20 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 621 IAPSSFFNCCMTKSRLLLSRVYTISSMMRLRKCMVSHMV 505
           +A  S+  CC+    L + R+  +S  M ++KC   + +
Sbjct: 124 VALGSWMGCCIASMTLAVIRICDLSMQMNIKKCFAGNKI 162


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
 Frame = +1

Query: 391 H*RIPRHGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHH--ALSQSHHRRYGVYA 564
           H     H    V HR +G++H T  +     E   H  HH  HH       HH  +G + 
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHG-HG 448

Query: 565 RQKQSRFCHAAVEKR*RCYFTTYFSYYSAPCARDHY 672
               +   H         +   +  ++ AP    H+
Sbjct: 449 HHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHH 484


>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 126 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 28
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 676 SYNDRGHMAHCSMKNTL*NSTFIVFQLLHDKI 581
           SY   GH+ HC+  + +    FI+ ++L DK+
Sbjct: 571 SYTQTGHIIHCNFADEILPFRFIIAEVLLDKV 602


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 676 SYNDRGHMAHCSMKNTL*NSTFIVFQLLHDKI 581
           SY   GH+ HC+  + +    FI+ ++L DK+
Sbjct: 571 SYTQTGHIIHCNFADEILPFRFIIAEVLLDKV 602


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +2

Query: 158 YSTIVLLVAMIPLT--PLFSRYKDSYLLYSFR-----LIDLLRASKSAHLTKLLSSQAT- 313
           +ST+ ++ + + +T  P    Y  S L +S        + LL +S SA    +++  A  
Sbjct: 50  FSTLGIVFSALEITAKPFSHNYNGSLLYFSTSELPETFVSLLMSSWSAFYIIVVAFIAVQ 109

Query: 314 YLYHFACLMKYKDIQKYEVQQLIEWAI 394
           ++Y + CL  Y   +K++  + + W I
Sbjct: 110 FVYRYLCLTNYNATKKFDGVKTVFWII 136


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 152 VRRRPQRRCTLAPTRTPTSLLF 87
           +RR+PQ   TL PT TPT  LF
Sbjct: 159 LRRKPQSIPTLPPTTTPTPRLF 180


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 331 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 450
           +F E+Q+HS+I  A V+++   R   H LA    T  H  YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328


>Z70284-5|CAA94276.2|  470|Caenorhabditis elegans Hypothetical
           protein K07F5.6 protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 613 RCYFTTYFSYYSAPCARDHYMNVKGFLI 696
           RC    + S +  P   DHYMN+KG+LI
Sbjct: 268 RCESNVHRSSFF-PLETDHYMNLKGWLI 294


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform b
           protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform a
           protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 114 DTDADEPIIYFENITECLTDDQCDKFTYFAEL 19
           +TDADE  I+ EN+     +D  +KFTY + L
Sbjct: 573 ETDADENCIFAENLQRS-EEDIPNKFTYSSSL 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,609,856
Number of Sequences: 27780
Number of extensions: 359440
Number of successful extensions: 1090
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)