Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    30   0.26 
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   1.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.3  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   7.5  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   9.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.9  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   9.9  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 302 HMPNDSIIGIDRLITDRFPSISSKNAYLLSATPIIDNTNTIRYANNN 162
           H PND++  ID L  DR    S K    L    I++N ++I   +++
Sbjct: 51  HKPNDALFVIDTLGDDRIAKRSRKKIKPLKVDQILENKSSIEKVHSH 97


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 556 WNSIVYLEIDYENAEILSXNCVYENL 633
           W +I+  +  Y+NAE +  NC+  NL
Sbjct: 21  WQAILNYKYIYQNAEAVQRNCINRNL 46


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 514  LDVLYRHYDLESVCWNSIVYLEIDYE 591
            L +L ++ +  S+CW  IVYL  D++
Sbjct: 1234 LRLLKKYLNDVSICWEQIVYLVQDFQ 1259


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 214 DNRYAFLLEIEGKRSVINLSIPIMLSFGMWILFYTFYFVW 333
           + RYA L+   G + +    +P+M++ G  +    F F W
Sbjct: 348 NQRYAKLITANGGKPLPEQRLPLMMAVGWLMPAGIFVFAW 387


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 408 LRRYHVYYGKRDHWAVLDAVCRVSNLRVQKWSSTDARCFISSLRFGIGV 554
           LR   +Y GK DH  +LD   +  N ++ KW   +         +G G+
Sbjct: 581 LRDVTLYIGK-DHITLLDLDPKDMNTKMSKWERDERNLIEGGWYYGRGM 628


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
 Frame = +1

Query: 268 LSIPIMLSFGM-WILFYTFYFVWKIV---VWTKNRIGSSNTN--VNFNAEKNFYVAITC- 426
           LS+ IM S  M ++LF + +  ++ +   +   +   SS T+  +N N   N  ++++  
Sbjct: 613 LSMVIMYSILMGYLLFCSGWIAYRAISDAIHNASSTSSSYTSALLNSNVFINIVISLSST 672

Query: 427 ----IMVNVITGLCWMLFAAFQIYVFKNGHLPTLDVLYRHYDLESVCWNS 564
               ++V++I+   W +F +F  Y+F +     +  +Y   +   V W +
Sbjct: 673 YGMYLVVSIISFDPWHMFTSFVQYIFLSIMYTNVLNVYAFCNTHDVSWGT 722


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 309 ILHVLFCMEDCRVDEKSHRLFKHKCKFQCGKKLLRRYHVYYGKRDHWAVLDAVCRVSNLR 488
           + ++   M+D  + E ++ L K+  KF+  ++L     V+          D VCRVS +R
Sbjct: 48  VCYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVF-------VYSDVVCRVSGIR 100

Query: 489 VQK 497
             K
Sbjct: 101 AWK 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,647
Number of Sequences: 5004
Number of extensions: 63318
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)