Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6e02
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 57 2e-09
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 32 0.075
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 30 0.30
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 4.9
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 6.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 6.5
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 8.6
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 8.6
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 8.6
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 57.2 bits (132), Expect = 2e-09
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 2/179 (1%)
Frame = +3
Query: 213 FTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMIS 392
F ++ P++ ++V S ++ +DS + R E+ L +E SY G+ +I+++
Sbjct: 73 FLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGLSSIILN 132
Query: 393 IHGRESN-NLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWS 569
G S N+ R + + + V + E E+ + E W W
Sbjct: 133 --GPTSPMNVMRYARAVSSALNSTMNLKFLVQL--------AIESGHED--YFETWKMWD 180
Query: 570 KFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
+ R+ V LEL A P E+V RW EP++ I + F N GYPVL R
Sbjct: 181 TIRSACGYHPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPNGYPVLGR 239
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 32.3 bits (70), Expect = 0.075
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 405 ESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSK 572
++N+L R L +T P ++ + C R C DD+ + WN +W SK
Sbjct: 511 KTNDLVRSLDENLKTKSGPEKLYLIMARYCLR----CVYDDKMDSLWNSRSFWVSK 562
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 321 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 488
RH D +N+ L + G+G+P I + I+ E NL +++ + S+ S+ P+
Sbjct: 99 RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156
Query: 489 LCSRTYRECTEDD 527
+ S T++D
Sbjct: 157 IKSDENLSFTDED 169
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 700 DVGTIIAFTGSPSHLFTTSCDGRSADNSKTTPTRLSQSRRSWNLDHQYQ 554
D+ I + LF + C G + D+S + T+LSQS + +L H Y+
Sbjct: 268 DIELITCKFSKLNSLFLSKCIGLT-DSSLLSLTKLSQSLTTLHLGHCYE 315
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 81 EYIITADLQTCLTEALQCSYSFIV-SPIIH 167
E+I +L T L E L+C Y I +P +H
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVH 424
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 240 PQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGR 404
P ++RI A SP ++ + + + +L+ EEL GL + I +GR
Sbjct: 2039 PSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGR 2098
Query: 405 ESNNLARILQTYYETSH 455
++LAR+L ++ H
Sbjct: 2099 TVHSLARLLAFWHVELH 2115
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 663 LGEPVKAIIVPTSIFHNNKKGYP 731
LG P K+ VPTS+ N + +P
Sbjct: 318 LGRPTKSPSVPTSVGSNKSRKFP 340
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 489 LCSRTYRECTEDDEEEKAWNEPW 557
LC + +C ++D+EE W E W
Sbjct: 86 LCQEKFEKCLKEDDEE--WIELW 106
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 249 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 383
WT K +++VDS + + +E +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,942
Number of Sequences: 5004
Number of extensions: 72334
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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