Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6e02
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 64 1e-10
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432 34 0.10
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 31 1.3
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 31 1.3
11_06_0647 + 25870470-25870744,25870765-25871533 30 1.7
10_08_0406 - 17688069-17690643,17691065-17691132 30 1.7
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 2.9
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 2.9
12_02_0929 - 24493168-24493458,24493545-24493643,24493768-244938... 29 3.9
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522... 29 5.2
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 64.1 bits (149), Expect = 1e-10
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 4/228 (1%)
Frame = +3
Query: 72 CGYEYI---ITADLQTCLTEALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSP 242
CG E + +L L+ +L S+ F+++P++ P +R G SD+VL P
Sbjct: 16 CGVEVLDFPAGEELPAVLSHSLSSSFDFLLAPLVDPDYR---PTPGSVLPVAASDLVLGP 72
Query: 243 QDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRES-NNL 419
W+S IV K+S +I++D+ +R E L +E+++ L + A ++ R S N
Sbjct: 73 AQWSSHIVGKISEWIDLDAEDEQLRLDSEITLKQEIAWASHLSLQACVLPPPKRSSCANY 132
Query: 420 ARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFHERLDWDK 599
AR++ + + L W +P+ S ED + K D
Sbjct: 133 ARVVNHILQGLTNLQL-WLRIPLEKS---EPMDEDHDGAK----------------DNSD 172
Query: 600 RVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
VG L + + LPS + RW GEP F N +GYP LS+
Sbjct: 173 MVGYSL-IRSTLPSMNSLGRWFGEPA---------FLTNARGYPCLSK 210
>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
Length = 314
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/101 (23%), Positives = 41/101 (40%)
Frame = +3
Query: 171 RFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEEL 350
R+R+ A KN F RS + S+ K + D PS + + +
Sbjct: 139 RWRKYGQKAVKNSPFPRSYYRCT----NSKCTVKKRVERSSDDPSVVITTYEGQHCHHTA 194
Query: 351 SYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 473
S+ RG+G A+ IHG + LA + + P +++
Sbjct: 195 SFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 246 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE--LSYCRGLGVPAIMISIH 398
DW SR++A Y+ +D P+AT D + E + R LG+ +++ H
Sbjct: 203 DWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTH 255
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 204 NGGFTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE 347
N G + SD S D+++ I A+ + Y+NVDS T R + +E
Sbjct: 100 NAGQSPSDQNQSEDDYSTPISARDNTYVNVDSGDETPRTEKRIFWTQE 147
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 492 CSRTYRECTEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRW 662
C+ E T+DD+EE E ++HE WD+R L +S LP E + W
Sbjct: 234 CAEEEGENTQDDKEESERQEEEKTTEEWHEWYKWDERSDRSL-VSIALPLIEAGEVW 289
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 390 SIHGRESNNLARILQTYYETSHHPSLIWAC 479
++H S N+ R++ TY+ +H P L W C
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLC 583
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 543 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 638
W +PWYWWS L W K+ L +A++P
Sbjct: 285 WFKPWYWWSWPILPLGLSWHKQRWDDLGYAAEMP 318
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 543 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 638
W +PWYWWS L W ++ L S++LP
Sbjct: 244 WFKPWYWWSWPVLPLGLSWHEQRRENLGYSSELP 277
>12_02_0929 -
24493168-24493458,24493545-24493643,24493768-24493872,
24494101-24494193,24494438-24494530,24494646-24494699,
24494816-24494917,24495058-24495132,24495245-24495418
Length = 361
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 154 RPLFTHVFVGNPQMPVKMVVLRGQIWF 234
R L T +FVGNP + M ++ WF
Sbjct: 252 RDLITRIFVGNPASRITMPEIKNHPWF 278
>02_01_0008 -
50576-50671,50767-50829,50918-50961,51048-51129,
52205-52371,52502-52654,52780-52960,53452-53540,
53599-53799,54804-55147,55397-55626
Length = 549
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 636 EDLQTTPKQHQHVYPNQGAHGIWTTSTRAHSKLSLLHHLQCILYMFYYIA*VHMPILETD 457
E L+T P + G + T LH+LQ ILY+ Y + ILE+D
Sbjct: 241 EGLETYPDIGHAAFGTTGRYAKMTALVLTLFPCMWLHYLQIILYIELYACCIEYLILESD 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,935
Number of Sequences: 37544
Number of extensions: 453113
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -