Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e02
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)                      30   2.3  
SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)                       29   5.3  
SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              28   9.2  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +3

Query: 336 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYREC 515
           L +E++Y   LG+P++M+ +      NLA  +      SH   L W  VPM CS    + 
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPMRCSEDMCDK 176

Query: 516 TEDDEEEKAWNEPWY 560
           +  DEE+    + +Y
Sbjct: 177 SLFDEEDSMGVQFYY 191


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 478 VYLCYVVEHIENALKMMKKRKLGMSPGTGGP-NSMSALIGINVLVLF 615
           V LCY++ ++ N + ++KK K     GTG P    S    ++ LV F
Sbjct: 414 VSLCYILSNLGNVVSLIKKGKTNCRAGTGIPLQRKSQTSSVSPLVQF 460


>SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)
          Length = 104

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 493 VVEHIENALKMMKKRKLGMSPGTGGPNSMSALIGINVLVLFWSCLQIFHHR 645
           ++  + N +++   +K+ + P +    S + +I      L  SC+Q+ HHR
Sbjct: 42  IISSVSNRMEL-SAQKVALKPASNSIPSNTIIINFVFAALHRSCMQLIHHR 91


>SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 42  IKKMAQQEISCGYEYIITADLQTCLTEALQCSYSFIVSPIIHPRFRRQSTNA 197
           +K    +  +  + +++TADL++ LTE+   S++++++  + P      T+A
Sbjct: 41  LKSALTESHTDSFTWLLTADLKSALTESHTDSFTWLLTADLKPALTESHTDA 92


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +3

Query: 333  YLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCSRTYRE 512
            +LN    +C   G PA+++S + +   + A+ L   Y+    P +          RTY  
Sbjct: 826  FLNCLRRFCARRGTPALIVSDNAKTFKSAAKFLNELYD---QPDI----------RTY-- 870

Query: 513  CTEDDEEEKAWNEPWYWWSKFHERL 587
            C E+  + K   E   WW  F ER+
Sbjct: 871  CEENRIQWKFNRERAPWWGGFFERI 895


>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
          Length = 437

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLEL 623
           T  D+E++   +   WWSKF+  +   ++ G  L+L
Sbjct: 116 TRRDKEKETMEQYVDWWSKFYASIGQAEKAGAYLDL 151


>SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 57  QQEISCGYEYIITADLQTCLTEALQCSYSFIVSP 158
           QQ+I+ GYE +  A L +C T+ +Q +   ++ P
Sbjct: 8   QQQITTGYESVAFAILSSCRTQFMQITDRILLYP 41


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 543 WNEPWYWWSKFHERLDWDKRV 605
           WN+PWY W K  +  D DK V
Sbjct: 26  WNKPWYQWDK--KENDADKTV 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,478,497
Number of Sequences: 59808
Number of extensions: 537793
Number of successful extensions: 1219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)