Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e02
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ002740-1|CAA05712.1|  609|Drosophila melanogaster capsuleen pr...   110   2e-24
AY122153-1|AAM52665.1|  610|Drosophila melanogaster LD07634p pro...   107   1e-23
AF167574-1|AAF04504.1|  610|Drosophila melanogaster putative pro...   107   1e-23
AE013599-2232|AAM68510.1|  610|Drosophila melanogaster CG3730-PA...   107   1e-23
AE013599-2233|AAF58030.1|  605|Drosophila melanogaster CG3730-PB...   107   2e-23
AF273707-1|AAL35409.1|  879|Drosophila melanogaster PFTAIRE-inte...    32   0.72 
AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB...    32   0.72 
AE014297-816|AAO41518.1|  879|Drosophila melanogaster CG33719-PA...    32   0.72 
AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa cent...    32   0.95 
AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-P...    32   0.95 

>AJ002740-1|CAA05712.1|  609|Drosophila melanogaster capsuleen
           protein.
          Length = 609

 Score =  110 bits (264), Expect = 2e-24
 Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 8/179 (4%)
 Frame = +3

Query: 231 VLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGL-GVPAIMISIHGRE 407
           +LS  DW S+++  +S  +NVDSP+A +R+  ++    ++++   L  V  +M+ + G E
Sbjct: 54  ILSGSDWNSKVIFTMSD-VNVDSPNAKLREHAKEVFMRDVAWAEHLQNVGNLMVRLRGPE 112

Query: 408 SNNLARILQTYYETSHHPSLIWACV-----PMLCSRTYR-ECTEDDEEEKAWNEPWYWWS 569
           + NLA I+    +    PS  W        P L +  +R + T ++  E   N+PW WW+
Sbjct: 113 NENLASIVLAKTKDDF-PSGNWFIQVPITNPELATFEHRKDATAEEVAEAESNDPWNWWN 171

Query: 570 KFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
                     +V VV+EL+ AD PS+E V+RWLGEP++AII+P+S+F  N+  Y VL +
Sbjct: 172 NLRMVTKHSTKVKVVIELNDADRPSKETVRRWLGEPIEAIIIPSSLFVRNRSNYCVLKK 230


>AY122153-1|AAM52665.1|  610|Drosophila melanogaster LD07634p
           protein.
          Length = 610

 Score =  107 bits (258), Expect = 1e-23
 Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
 Frame = +3

Query: 231 VLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGL-GVPAIMISIHGRE 407
           +LS  DW S+++  +S  +NVDSP+  +R+  ++    ++++   L  V  +M+ + G E
Sbjct: 54  ILSGSDWNSKVIFTMSD-VNVDSPNDKLREHAKEVFMRDVAWAEHLQNVGNLMVRLRGPE 112

Query: 408 SNNLARILQTYYETSHHPSLIWACV-----PMLCSRTYR-ECTEDDEEEKAWNEPWYWWS 569
           + NLA I+    +    PS  W        P L +  +R + T ++  E   N+PW WW+
Sbjct: 113 NENLASIVLAKTKDDF-PSGNWFIQVPITNPELATFEHRKDATAEEVAEAESNDPWNWWN 171

Query: 570 KFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
                     +V VV+EL+ AD PS+E V+RWLGEP++AII+P+S+F  N+  Y VL +
Sbjct: 172 NLRMVTKHSTKVKVVIELNDADRPSKETVRRWLGEPIEAIIIPSSLFVRNRSNYCVLKK 230


>AF167574-1|AAF04504.1|  610|Drosophila melanogaster putative
           protein methyltransferaseJBP1 protein.
          Length = 610

 Score =  107 bits (258), Expect = 1e-23
 Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
 Frame = +3

Query: 231 VLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGL-GVPAIMISIHGRE 407
           +LS  DW S+++  +S  +NVDSP+  +R+  ++    ++++   L  V  +M+ + G E
Sbjct: 54  ILSGSDWNSKVIFTMSD-VNVDSPNDKLREHAKEVFMRDVAWAEHLQNVGNLMVRLRGPE 112

Query: 408 SNNLARILQTYYETSHHPSLIWACV-----PMLCSRTYR-ECTEDDEEEKAWNEPWYWWS 569
           + NLA I+    +    PS  W        P L +  +R + T ++  E   N+PW WW+
Sbjct: 113 NENLASIVLAKTKDDF-PSGNWFIQVPITNPELATFEHRKDATAEEVAEAESNDPWNWWN 171

Query: 570 KFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
                     +V VV+EL+ AD PS+E V+RWLGEP++AII+P+S+F  N+  Y VL +
Sbjct: 172 NLRMVTKHSTKVKVVIELNDADRPSKETVRRWLGEPIEAIIIPSSLFVRNRSNYCVLKK 230


>AE013599-2232|AAM68510.1|  610|Drosophila melanogaster CG3730-PA,
           isoform A protein.
          Length = 610

 Score =  107 bits (258), Expect = 1e-23
 Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
 Frame = +3

Query: 231 VLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGL-GVPAIMISIHGRE 407
           +LS  DW S+++  +S  +NVDSP+  +R+  ++    ++++   L  V  +M+ + G E
Sbjct: 54  ILSGSDWNSKVIFTMSD-VNVDSPNDKLREHAKEVFMRDVAWAEHLQNVGNLMVRLRGPE 112

Query: 408 SNNLARILQTYYETSHHPSLIWACV-----PMLCSRTYR-ECTEDDEEEKAWNEPWYWWS 569
           + NLA I+    +    PS  W        P L +  +R + T ++  E   N+PW WW+
Sbjct: 113 NENLASIVLAKTKDDF-PSGNWFIQVPITNPELATFEHRKDATAEEVAEAESNDPWNWWN 171

Query: 570 KFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
                     +V VV+EL+ AD PS+E V+RWLGEP++AII+P+S+F  N+  Y VL +
Sbjct: 172 NLRMVTKHSTKVKVVIELNDADRPSKETVRRWLGEPIEAIIIPSSLFVRNRSNYCVLKK 230


>AE013599-2233|AAF58030.1|  605|Drosophila melanogaster CG3730-PB,
           isoform B protein.
          Length = 605

 Score =  107 bits (256), Expect = 2e-23
 Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
 Frame = +3

Query: 231 VLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGL-GVPAIMISIHGRE 407
           +LS  DW S+++  +S  +NVDSP+  +R+  ++    ++++   L  V  +M+ + G E
Sbjct: 54  ILSGSDWNSKVIFTMSD-VNVDSPNDKLREHAKEVFMRDVAWAEHLQNVGNLMVRLRGPE 112

Query: 408 SNNLARILQTYYETSHHPSLIWACVPMLCSRTYRECTEDDEEEKAWNEPWYWWSKFHERL 587
           + NLA I+    + +    +      +      ++ T ++  E   N+PW WW+      
Sbjct: 113 NENLASIVLAKTKGNWFIQVPITNPELATFEHRKDATAEEVAEAESNDPWNWWNNLRMVT 172

Query: 588 DWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSR 743
               +V VV+EL+ AD PS+E V+RWLGEP++AII+P+S+F  N+  Y VL +
Sbjct: 173 KHSTKVKVVIELNDADRPSKETVRRWLGEPIEAIIIPSSLFVRNRSNYCVLKK 225


>AF273707-1|AAL35409.1|  879|Drosophila melanogaster
           PFTAIRE-interacting factor 1A protein.
          Length = 879

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 111 CLTEALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYIN 290
           CL + LQC     +  ++     R  T    N   + S      Q    RIVA + PY N
Sbjct: 244 CLQQLLQCVQQLDLDTMMPGDQNRTETPKRHNSTHSHSHSHSHSQSHNHRIVATVQPYSN 303

Query: 291 VDSPSA--TVRQRH 326
             +P+A  T  +RH
Sbjct: 304 CATPTAPPTPSKRH 317


>AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB,
           isoform B protein.
          Length = 1308

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 111 CLTEALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYIN 290
           CL + LQC     +  ++     R  T    N   + S      Q    RIVA + PY N
Sbjct: 244 CLQQLLQCVQQLDLDTMMPGDQNRTETPKRHNSTHSHSHSHSHSQSHNHRIVATVQPYSN 303

Query: 291 VDSPSA--TVRQRH 326
             +P+A  T  +RH
Sbjct: 304 CATPTAPPTPSKRH 317


>AE014297-816|AAO41518.1|  879|Drosophila melanogaster CG33719-PA,
           isoform A protein.
          Length = 879

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 111 CLTEALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYIN 290
           CL + LQC     +  ++     R  T    N   + S      Q    RIVA + PY N
Sbjct: 244 CLQQLLQCVQQLDLDTMMPGDQNRTETPKRHNSTHSHSHSHSHSQSHNHRIVATVQPYSN 303

Query: 291 VDSPSA--TVRQRH 326
             +P+A  T  +RH
Sbjct: 304 CATPTAPPTPSKRH 317


>AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa
           centrosomal protein protein.
          Length = 2726

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 312 VRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNL 419
           V+++ +DYLN++++ CR LG   + I+    ES  L
Sbjct: 665 VQRKFDDYLNQQITLCRDLGAQELKIARDQWESEKL 700


>AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-PB,
           isoform B protein.
          Length = 2897

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 312 VRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNL 419
           V+++ +DYLN++++ CR LG   + I+    ES  L
Sbjct: 836 VQRKFDDYLNQQITLCRDLGAQELKIARDQWESEKL 871


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,671,729
Number of Sequences: 53049
Number of extensions: 788587
Number of successful extensions: 2165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2155
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)