Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6e02
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 591 WDKRVGVVLELSADLPSQEVVKRWLGE 671
           WD  V +V++ + +LP  ++VK +  +
Sbjct: 195 WDPDVPLVVDENIELPQLQLVKNYTAD 221


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 475 HVYLCYVVEHIENALKMMKKRKLGMSPGTGGPNSMSALIGINVLVLFW 618
           H +  Y    I     M +KRK     G    + + A+IG   L LFW
Sbjct: 177 HTFGAYFGLAISFVFGMKEKRKEHHLEGPSYNSDIFAMIGTIFLWLFW 224


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 612 QHQHVYPNQGAH 577
           QH H+ P QG H
Sbjct: 175 QHPHMQPQQGQH 186


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 642 VMEDLQTTPKQHQHVY---PNQGAHGIWTTSTRAHSKL 538
           +M  L TTP+ + H+Y   P+   +       R HS+L
Sbjct: 76  LMNKLPTTPEYNNHLYGSTPDSRDYFSRPFEKRLHSRL 113


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 633 LPSQEVVKRWLGEPVKAIIVPT 698
           LP QEV + +L   ++A+  PT
Sbjct: 30  LPGQEVKQSFLKNQLQALFQPT 51


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 633 LPSQEVVKRWLGEPVKAIIVPT 698
           LP QEV + +L   ++A+  PT
Sbjct: 30  LPGQEVKQSFLKNQLQALFQPT 51


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 633 LPSQEVVKRWLGEPVKAIIVPT 698
           LP QEV + +L   ++A+  PT
Sbjct: 30  LPGQEVKQSFLKNQLQALFQPT 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,297
Number of Sequences: 438
Number of extensions: 5213
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)