Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ZL25 Cluster: Putative NtrC family transcriptional re...    33   1.4  
UniRef50_Q9ZSN2 Cluster: NBS-LRR-like protein cD8; n=2; Phaseolu...    33   2.5  
UniRef50_Q49MA6 Cluster: Nuclear receptor 2DBD-gamma; n=3; Bilat...    32   3.3  
UniRef50_Q4RS34 Cluster: Chromosome 7 SCAF15001, whole genome sh...    31   5.7  
UniRef50_A0CUR1 Cluster: Chromosome undetermined scaffold_28, wh...    31   9.9  

>UniRef50_Q8ZL25 Cluster: Putative NtrC family transcriptional
           regulator; n=10; Enterobacteriaceae|Rep: Putative NtrC
           family transcriptional regulator - Salmonella
           typhimurium
          Length = 932

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 143 PIFFLKQQSRESLQHHCTIQISNETHSLNSLCPHRKHVYAPSRPY 9
           P++FL +Q+ E+L      +   E  S+  + PH +H YAP  P+
Sbjct: 65  PVYFLHRQALETLLGRQLEESEREVRSVADVLPHEEH-YAPDDPF 108


>UniRef50_Q9ZSN2 Cluster: NBS-LRR-like protein cD8; n=2; Phaseolus
           vulgaris|Rep: NBS-LRR-like protein cD8 - Phaseolus
           vulgaris (Kidney bean) (French bean)
          Length = 900

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 376 LSEQEAISAFKYLRILIVXWCSNIE 302
           +S QE IS FK+LR+L + +CSNI+
Sbjct: 270 MSIQELISNFKFLRLLSLSYCSNIK 294


>UniRef50_Q49MA6 Cluster: Nuclear receptor 2DBD-gamma; n=3;
           Bilateria|Rep: Nuclear receptor 2DBD-gamma - Schistosoma
           mansoni (Blood fluke)
          Length = 1861

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 131 LKQQSRESLQHHCTIQISNETHSLNSL 51
           ++ QS    QHHC  QI++  HSLN L
Sbjct: 174 VQSQSHYHHQHHCNFQITHNHHSLNQL 200


>UniRef50_Q4RS34 Cluster: Chromosome 7 SCAF15001, whole genome
           shotgun sequence; n=3; Clupeocephala|Rep: Chromosome 7
           SCAF15001, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 522

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -2

Query: 143 PIFFLKQQSRESLQHHCTIQISNETHSLNSLCPHRKHVYAPSRPYL 6
           P+F L+Q ++ S+     +Q S+  H L+SL P+    ++PS P+L
Sbjct: 174 PVFVLQQSNKVSV-----VQQSHGMHPLSSLLPYGNEHFSPSPPHL 214


>UniRef50_A0CUR1 Cluster: Chromosome undetermined scaffold_28, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_28, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 4211

 Score = 30.7 bits (66), Expect = 9.9
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -2

Query: 227  DWTKAVATHMTAITLQKFMLVDILKMTVPIFFLKQQSRESLQHHCTIQISNETHSLN 57
            +W      H T +TL + + +D++  ++ + FL  QS+ + Q       +NE+ SL+
Sbjct: 3634 EWNVTTQLHKTIVTLPETVKIDLVLFSINLKFLMFQSQSNSQLELWNFQANESSSLS 3690


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,189,467
Number of Sequences: 1657284
Number of extensions: 5294460
Number of successful extensions: 11210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11210
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)