Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.26 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.26 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   3.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   3.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.6  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    20   7.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    20   7.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 139 IGTVIFNMSTNMNFWRVIAVMCVATAFVQSKSTHHQKRATRPNI 270
           I  V+F   TNM F  V AV+ V +  +      H+    RP+I
Sbjct: 446 INGVLFVFLTNMTFQNVFAVINVFSGELPVFLQEHRNGMYRPSI 489



 Score = 19.8 bits (39), Expect = 9.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 193 RSPSRSSCWLTY 158
           +SP ++SCW  +
Sbjct: 386 KSPYKASCWAQF 397


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 139 IGTVIFNMSTNMNFWRVIAVMCVATAFVQSKSTHHQKRATRPNI 270
           I  V+F   TNM F  V AV+ V +  +      H+    RP+I
Sbjct: 446 INGVLFVFLTNMTFQNVFAVINVFSGELPVFLQEHRNGMYRPSI 489



 Score = 19.8 bits (39), Expect = 9.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 193 RSPSRSSCWLTY 158
           +SP ++SCW  +
Sbjct: 386 KSPYKASCWAQF 397


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 121 CCFKKKIGTVIFNMST 168
           CC    I T+ FN +T
Sbjct: 61  CCLNLSIVTIFFNFAT 76


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 217 FVQSKSTHHQ 246
           F+Q +STHHQ
Sbjct: 234 FMQEQSTHHQ 243


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 145 TVIFNMSTNMNFWRVIAVMCVATAFVQSKSTH 240
           TV+  +++    W +   MC A  FV+    H
Sbjct: 124 TVLVEVNSRPETWVLGREMCKAVPFVELTVAH 155


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 145 TVIFNMSTNMNFWRVIAVMCVATAFVQSKSTH 240
           TV+  +++    W +   MC A  FV+    H
Sbjct: 124 TVLVEVNSRPETWVLGREMCKAVPFVELTVAH 155


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 100 CCSDSLDCCFKKKIGTVIFNMSTNMNFWRVIAV 198
           CCS    C F  K+  V  N+      +R +AV
Sbjct: 101 CCSVIFGCIFALKVIEVFKNIEEVDVAFRSLAV 133


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 100 CCSDSLDCCFKKKIGTVIFNMSTNMNFWRVIAV 198
           CCS    C F  K+  V  N+      +R +AV
Sbjct: 101 CCSVIFGCIFALKVIEVFKNIEEVDVAFRSLAV 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,525
Number of Sequences: 336
Number of extensions: 1417
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)