Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    28   0.58 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   2.3  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   3.1  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   4.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   4.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   5.4  

>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 278 RSQMLGRVALF*WCVDLDWTKAVATHMTAITLQKFMLVDILKMTVPIFFLKQ--QSRESL 105
           +++M+GR +     + LDW+    T    I LQ+    ++ + T P+  +       +SL
Sbjct: 42  KAKMMGRTSKEASRIFLDWSGIDLTCEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSL 101

Query: 104 QHHCTIQISNETHSLNSLCPHRKHVY 27
                +  S++TH+      H  H++
Sbjct: 102 NIPIALATSSDTHNFEKKSAHLSHLF 127


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 158 LKMTVPIFFLKQQSRESLQHHC 93
           +K T PIFF KQ       H+C
Sbjct: 822 VKSTCPIFFQKQLDNYKADHYC 843


>SPAC12B10.15c |||ribonuclease H2 complex
          subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 98 HCTIQISNETHSLNSLC 48
          H  IQISN THS  ++C
Sbjct: 41 HDKIQISNNTHSKTTVC 57


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 104 QHHCTIQISNETHSLNSLCPHRKHVY 27
           +H+CT+++ +  + LNS     K+V+
Sbjct: 639 RHNCTVRVESPVNELNSTMEEVKNVW 664


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 187 VIAVMCVATAFVQSKSTHHQKRATRPNICDL 279
           V+   C   A + ++  HH +R   PNI  L
Sbjct: 58  VLKSSCRKQAIILAREIHHHRRLLHPNITRL 88


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 349 FKYLRILIVXWCSNIERPVCYCTLD 275
           F+Y+ + +V W + +    C+ TLD
Sbjct: 396 FRYIFLKMVFWTARVNLYQCFITLD 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,071
Number of Sequences: 5004
Number of extensions: 23131
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)