Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0502 - 19746100-19746185,19746745-19750474                       27   6.7  
10_01_0133 + 1621574-1625779                                           27   6.7  

>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 340 LRILIVXWCSNIER-PVCYCTLD 275
           L  LIV WC N+++ P   CTL+
Sbjct: 880 LNTLIVRWCPNLKKLPALPCTLE 902


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 99   SLHYSNFERDTFFEFAMSAQETRLRAFAALLEL 1
            SLH   F  DT  +     QET L+   +L EL
Sbjct: 1309 SLHRLTFRNDTMVQHFTEEQETALKLLTSLQEL 1341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,019
Number of Sequences: 37544
Number of extensions: 149303
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)