Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     32   0.18 
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 137  FFLKQQSRESLQHHCTIQISNETHSLNSLCPHRKHVY 27
            F + Q    +L+HH +I I N+     S+CP   H+Y
Sbjct: 1309 FGIVQYKATALEHHLSISILNKVAPRQSMCPGFSHLY 1345


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 139  IGTVIFNMSTNMNFWRVIAVMCVATAFVQSKSTHHQKRATRPNICDLVYNNTLDVRC 309
            I T ++N  + +N   V+ V  +   F  +  T+H     +P +    YN  L   C
Sbjct: 2170 IDTEVYNNVSRVNRTFVVTVYKIIP-FTTANLTNHPNALAQPTVISFDYNGALPYEC 2225


>SB_37080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 239 CVDLDWTKAVATHMTAITLQKFMLVDIL 156
           C DLDW + +A HM     Q   + +IL
Sbjct: 32  CEDLDWKRVLAVHMWYHNSQTSSISEIL 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,686
Number of Sequences: 59808
Number of extensions: 192156
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)