Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical ...    27   3.4  
U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    26   7.9  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    26   7.9  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    26   7.9  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    26   7.9  

>Z83231-6|CAI46597.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/86 (22%), Positives = 41/86 (47%)
 Frame = -2

Query: 317 VQ*HRTSSVLLYTRSQMLGRVALF*WCVDLDWTKAVATHMTAITLQKFMLVDILKMTVPI 138
           VQ  +   VL+   + M+  V++     DL W     T      ++KF+ ++ L +   +
Sbjct: 264 VQSFKLLHVLVIEVAIMITTVSITILLGDLGWISPDHTVFVFYVMEKFIHINPLFICSAV 323

Query: 137 FFLKQQSRESLQHHCTIQISNETHSL 60
           F++K +  +SL      +++  TH++
Sbjct: 324 FYMKPRWLKSLLQLVPGRLARRTHAV 349


>AL032647-8|CAI46617.1|  373|Caenorhabditis elegans Hypothetical
           protein F57G9.7 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/86 (22%), Positives = 41/86 (47%)
 Frame = -2

Query: 317 VQ*HRTSSVLLYTRSQMLGRVALF*WCVDLDWTKAVATHMTAITLQKFMLVDILKMTVPI 138
           VQ  +   VL+   + M+  V++     DL W     T      ++KF+ ++ L +   +
Sbjct: 264 VQSFKLLHVLVIEVAIMITTVSITILLGDLGWISPDHTVFVFYVMEKFIHINPLFICSAV 323

Query: 137 FFLKQQSRESLQHHCTIQISNETHSL 60
           F++K +  +SL      +++  TH++
Sbjct: 324 FYMKPRWLKSLLQLVPGRLARRTHAV 349


>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +1

Query: 103 CSDSLDCCFKKKIGTVIFNMSTN------MNFWR-VIAVMCVATAF 219
           C+  + C F   IG V+F++          N+WR   A  C AT F
Sbjct: 278 CAVGVACTFSAPIGGVLFSIEVTSVYFAVRNYWRGFFAATCSATLF 323


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +1

Query: 103 CSDSLDCCFKKKIGTVIFNMSTN------MNFWR-VIAVMCVATAF 219
           C+  + C F   IG V+F++          N+WR   A  C AT F
Sbjct: 207 CAVGVACTFSAPIGGVLFSIEVTSVYFAVRNYWRGFFAATCSATLF 252


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +1

Query: 103 CSDSLDCCFKKKIGTVIFNMSTN------MNFWR-VIAVMCVATAF 219
           C+  + C F   IG V+F++          N+WR   A  C AT F
Sbjct: 207 CAVGVACTFSAPIGGVLFSIEVTSVYFAVRNYWRGFFAATCSATLF 252


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +1

Query: 103 CSDSLDCCFKKKIGTVIFNMSTN------MNFWR-VIAVMCVATAF 219
           C+  + C F   IG V+F++          N+WR   A  C AT F
Sbjct: 278 CAVGVACTFSAPIGGVLFSIEVTSVYFAVRNYWRGFFAATCSATLF 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,735
Number of Sequences: 27780
Number of extensions: 138664
Number of successful extensions: 297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)