Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d22
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.23 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.53 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 376 LSEQEAISAFKYLRILIVXWCSNIERPVCYCTLD 275
           L   +AI AF     L + +C+++  P+ Y TL+
Sbjct: 398 LKNPDAIPAFLSSLFLWLGYCNSLLNPIIYATLN 431


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 337 RILIVXWCSNIERPVCY 287
           RIL V W  NI RP C+
Sbjct: 77  RILDVDWLHNIWRPDCF 93


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 239 CVDLDWTKAVATHMTAITLQKFMLVDILKMTVPIFFL 129
           CV + +   +A ++ A + +K  L   + ++  +FFL
Sbjct: 246 CVSISYLSVLAFYLPADSGEKIALCINILLSQTMFFL 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,125
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)