Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d20
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    29   0.47 
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    27   1.4  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   1.9  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   5.8  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   7.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.7  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 366 CEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 214
           CE +G +V  A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLYV--AFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 265 ETRVETVPQQRRGLLHGFRAHQARARDVLAPLLAKLIRSV 384
           E R+E V +Q R L  G   + +   DVLAPL +   +++
Sbjct: 201 ERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAI 240


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 115 VQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLS 14
           +Q   G I+  LD   +   CR+G+L + QRRLS
Sbjct: 1   MQTYTGIIKTPLDAIILFEACRIGLLPRVQRRLS 34


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 149 TNLTRRLVSLNCG--RADDDQMRYVLXTEPTVHHTLLE 256
           +N TRR+  L+CG  RA  D + + +  E T+H   L+
Sbjct: 291 SNQTRRV--LHCGDFRASKDHVMHPVLREKTIHKVYLD 326


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 66  IPLPSRAISMRPRRCCTPK 122
           +PLPSR+ SM PR     K
Sbjct: 354 VPLPSRSHSMNPRELVAAK 372


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 258 FSSSVWCTVGSVCSTYR 208
           F +SVWC + S C  +R
Sbjct: 171 FHTSVWCDMSSYCIAWR 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,132
Number of Sequences: 5004
Number of extensions: 27308
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)