Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d20
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0196 + 20835495-20837255                                         30   1.1  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    28   3.3  
05_01_0051 - 345125-345693,345833-346925                               28   4.4  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    28   4.4  
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279           27   7.6  
06_03_0609 + 22710442-22713502,22713596-22713948                       27   7.6  
03_06_0346 - 33287761-33287895,33288418-33288489,33288577-332886...    27   7.6  

>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -3

Query: 67  IKLYCRLGVLEQAQRRL-SGGA 5
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 244 VVHGGLGXQHVPH 206
           VV GGLG QH+PH
Sbjct: 241 VVQGGLGFQHIPH 253


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 86  HFYAATTLLYAERNLF 133
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 158 TRRLVSLNCGRADDDQMRYVLXTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDF 319
           T R +S    RA  D +R++L    ++H  ++EKL K  L       E+YC  F
Sbjct: 264 THRPLSEMMIRAATDDVRFLL----SIHEKMMEKLSKVSLWRLSVRSELYCRCF 313


>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
          Length = 1066

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 166 SPRQVCSLADLEQIPFGVQQRRGRIEMAL-DGSGIKLYCRLGVLEQAQRRLSGGAP 2
           +P+++  LAD+ +    +     ++  +L DG  +  + RL VL+ +  +LSG  P
Sbjct: 255 TPKELKFLADISETVLYLNLSNNKLTGSLIDGVELSTFGRLKVLDLSHNQLSGDLP 310


>06_03_0609 + 22710442-22713502,22713596-22713948
          Length = 1137

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 163 PRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLSGGAP 2
           P+++ +L  L ++     Q  G I + +      L+ +LG+L  AQ RLSG  P
Sbjct: 505 PQEIGNLKSLTELYMDYNQLTGNISLTIGN----LH-KLGILSFAQNRLSGQIP 553


>03_06_0346 -
           33287761-33287895,33288418-33288489,33288577-33288645,
           33288782-33288847,33289025-33289228,33291194-33291445
          Length = 265

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 31  PAPRRPSDSKV*FRSRRGPFLCGHDAAVR-RKESVQDRPDYKLDAATGFSEL 183
           P P  P    +  R+RRG     H  A R R+E + +R     D   G +++
Sbjct: 124 PPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,013
Number of Sequences: 37544
Number of extensions: 216825
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)