Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6d18
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 31 0.77
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 1.0
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 7.2
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 188 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPXMQDERKMS 361
T + CK +K L S + N+D I V+F +KK I + +V+ DE
Sbjct: 33 TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92
Query: 362 KRKKKVINNNKYILFN 409
K + + +Y++ N
Sbjct: 93 KEAYEEEESREYVIEN 108
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 149 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 328
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + + L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELTS 179
Query: 329 MPXMQDERKMSKR 367
+ K +R
Sbjct: 180 CQNRFKQMKQERR 192
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 197 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
AA KNE LL+ L+ SYN++ Q++ I K N NY
Sbjct: 34 AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 451 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHXRHY 326
A PLG+L VPT Q F+ N ++ HF V+ R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 320 LNVMPXMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 481
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 227 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPXMQDERKMSKRKKKVINNNK 394
N LE+ KSNM +++ N EK + L + RK++++KK N +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = -1
Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 371
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 370 LAFGHFAFVL 341
G FA VL
Sbjct: 246 TNSGPFASVL 255
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.5 bits (58), Expect = 7.2
Identities = 33/134 (24%), Positives = 54/134 (40%)
Frame = +2
Query: 146 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 325
+KS V + ++ E EKLL K M+Q I N LE+K
Sbjct: 868 EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924
Query: 326 VMPXMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVF 505
VM M D + +RK + +N K L N K+++ + +L K E + +
Sbjct: 925 VM-KMNDVLREYERKIEQLNMEKTDLENE-NQKLRETQNRQDSHYSNLEKEVMEKSSLI- 981
Query: 506 IFDHTEKMGKKMAD 547
D + +K++D
Sbjct: 982 --DELQNQIQKLSD 993
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,086
Number of Sequences: 27780
Number of extensions: 307835
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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