Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d16
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    33   0.11 
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   1.8  
11_03_0181 - 11301759-11301838,11302294-11303095                       27   9.5  
04_03_0641 + 18261332-18262423                                         27   9.5  

>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 286  QELNNIKSKIELYEAQVSTCKNVR-QIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVED 462
            +E+  ++ KI+ Y  Q+++ +    QIK N  S   T +++  Q  +  NK+F  +S   
Sbjct: 1342 REIQYLEQKIQKYSGQINSLEETLVQIKGNAESGTSTLVDQLDQLESHFNKSFSHFSARS 1401

Query: 463  SISSNEV 483
               S E+
Sbjct: 1402 FACSEEL 1408


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +1

Query: 295 NNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLN---KNFITYSVEDS 465
           NN++  +  +   +S+   V  ++QNR S        +LQ LT L+    N I+ S+ DS
Sbjct: 279 NNLEGTVPAWLGNLSSLVFV-SLQQNRLSGHIPESLGRLQMLTSLDLSQNNLISGSIPDS 337

Query: 466 ISSNEVLDNIDLEYD 510
           + +   L ++ L+Y+
Sbjct: 338 LGNLGALSSLRLDYN 352


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 464 AFQATKCWTTSIWNMTT 514
           AF   KCWT+ +W+ T+
Sbjct: 229 AFPHVKCWTSPVWSATS 245


>04_03_0641 + 18261332-18262423
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 410 SCFSMRVLMLLDLFCFICLTFLQVETCASYN 318
           SC  + +L + +L  F CL  L++E+C + N
Sbjct: 241 SCRQLALLPIDELHRFSCLEVLRIESCPNLN 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,061,729
Number of Sequences: 37544
Number of extensions: 211075
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)