Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d16
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)                  30   1.0  
SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)                      29   2.4  
SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             27   9.7  
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)          27   9.7  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_35105| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/45 (24%), Positives = 32/45 (71%)
 Frame = +1

Query: 280 VLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ 414
           V QEL N ++ I   + ++ TC+ + ++++N+ ++ K++++++L+
Sbjct: 770 VSQELKNAQAHIAQKQKELQTCERISELEENK-ADTKSKMDERLK 813


>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
          Length = 776

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 316 ELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTP---LNKNFITYSVEDSISSNEVL 486
           ++Y+ +   C+  +  K N   N  T   ++L+ L     L  N I  SVEDS+ S++++
Sbjct: 538 QVYKGEFCHCEFDKIFKSNTCKNTSTIHTRRLRSLGKNINLELNRIKRSVEDSVYSDDII 597

Query: 487 DN 492
           D+
Sbjct: 598 DH 599


>SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)
          Length = 417

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +1

Query: 247 FVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTP 426
           F+ V+K      L+  N  KSKI   +      + V +IKQ   +  + R++KQ Q L  
Sbjct: 240 FLRVEKAELERKLESSN--KSKIHYKQQWGRALREVAKIKQQEQTVARARLKKQEQELEH 297

Query: 427 LNKNFITYSVEDSISSNE 480
           +   ++    ++ + + E
Sbjct: 298 MRLRYLAAEEKEVVKATE 315


>SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +1

Query: 277 SVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSV 456
           +++Q++ +I++K +    Q STC  V  +K    S  +       +FL P+    I  +V
Sbjct: 250 TIVQQVIDIQNKAQEQSQQQSTCSLVEDLKNTMVSKNELECGIPAEFLDPI--TCILMTV 307

Query: 457 EDSISSNEVLDNIDLE 504
              + S E +D+  L+
Sbjct: 308 PILLPSGENVDSSTLD 323


>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 376 SSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNI 495
           S+NIKT   K    +  LNK  + Y  E  +    VLDNI
Sbjct: 315 SNNIKTLATKTNAKVQHLNKEVLNYLKEGFLVDEYVLDNI 354


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 437 ISSHTLWKTAFQATKC 484
           I+S +LW  +FQATKC
Sbjct: 507 ITSTSLWSISFQATKC 522


>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
          Length = 704

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 85  MDGVKLLGTCALIILLST 138
           M+G  +LGT A+I+LLST
Sbjct: 117 MEGAGILGTAAVIVLLST 134


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 289 ELNNIKSKIELYEAQVSTCK-NVRQIKQNRSSNIKTRIEKQLQFLTP 426
           E N   + +++Y A++STCK    Q+ +   + ++T++ +  + + P
Sbjct: 335 EFNENSAHLQVYNARISTCKEEASQVLEMLLNTVETKVMQLKKCVCP 381


>SB_35105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 265 IFSQTQIFRLYDVANRTCVQTRGLR 191
           IFS T++ + ++V  + C+QT  +R
Sbjct: 1   IFSYTKVLKCWNVKEQVCIQTLAIR 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,857,546
Number of Sequences: 59808
Number of extensions: 271698
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)