Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d13
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   1.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   2.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    22   9.8  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    22   9.8  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -1

Query: 109 NCIAFIADTKQ--RYLHIIAN 53
           N + F  D+K   RYLHIIAN
Sbjct: 183 NLLEFYKDSKHLSRYLHIIAN 203


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 51  QFAIMCKYRCLVSAIKA 101
           QF+++CK+  LV+A+ A
Sbjct: 2   QFSVLCKFLLLVTAVMA 18


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 94  IADTKQRYLHIIANCFNLNLI*YIGF 17
           I D+    + +IA+  +LN++ Y+GF
Sbjct: 873 IVDSINAEISMIADLDHLNIVQYLGF 898


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 73  YLHIIANCFNLNLI*YIGFPG 11
           ++H+I +  +L  I ++GFPG
Sbjct: 39  HIHLIPHLNSLYSICFLGFPG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,856
Number of Sequences: 5004
Number of extensions: 3495
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)