Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d11
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    29   0.79 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.7  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.7  

>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 352 TLQ*TNLKLKYLSRCKRRTTVSMIQLLRLQPCFEMGTNIFIVMDM 218
           +LQ    KLK     K   ++S   ++    CFE  TNI++++++
Sbjct: 75  SLQNDKTKLKLFGEIKVHQSMSHPNIVGFIDCFEDSTNIYLILEL 119


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 277 LLRLQPCFEMGTNIFIVMDMV 215
           L+ L  CF+  T I+ VMD V
Sbjct: 746 LVNLHSCFQTETRIYFVMDFV 766


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 318 RYFNFKLVYCKVHALSLSHVCLSSVDMDNFLR 413
           +Y NFK +    + ++  HV  S + +DN LR
Sbjct: 182 KYSNFKSLMTSYNKVNGEHVSQSRILLDNILR 213


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 439 NFNSHYTTSLYCDSLIKENGMPHPNRSYL 525
           +  + Y T+ YC S ++    P+P+  YL
Sbjct: 194 HLRASYGTTKYCTSYLRNQQCPNPSCMYL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,985
Number of Sequences: 5004
Number of extensions: 51315
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)