Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d11
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0287 + 22047404-22048409,22048754-22049967                       31   0.82 
09_06_0278 + 21991016-21992120,21992341-21992702,21992766-219934...    28   5.8  
12_01_0950 - 9463148-9464358,9465326-9465644                           28   7.6  

>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 146 EKEGVYKGGVVRTTTFDKRSPFYHHIHHNENIGAHFET 259
           EK  VY  GV+      ++ PF H     E + AHF T
Sbjct: 591 EKSDVYSFGVILVELLTRKKPFSHLTPEGEGLVAHFVT 628


>09_06_0278 +
           21991016-21992120,21992341-21992702,21992766-21993459,
           21994064-21994191
          Length = 762

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 146 EKEGVYKGGVVRTTTFDKRSPFYHHIHHNENIGAHFET 259
           +K  +Y  GVV      ++ P+ +    +E++ AHF T
Sbjct: 603 DKSDIYSFGVVLMELLTRKKPYSYRSAEDESLVAHFST 640


>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 146 EKEGVYKGGVVRTTTFDKRSPFYHHIHHNENIGAHFETRL 265
           EK  VY  GV+      ++ PF +     +++ AHF + L
Sbjct: 362 EKSDVYSFGVILIELLTRKKPFSYRSPEGDSLVAHFTSLL 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,270
Number of Sequences: 37544
Number of extensions: 293315
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)