Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6d11
(663 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022597-1|AAY55013.1| 182|Drosophila melanogaster IP06786p pro... 30 3.2
AE014297-1665|AAF54934.1| 183|Drosophila melanogaster CG14379-P... 30 3.2
U06456-1|AAB19244.1| 196|Drosophila melanogaster transcription ... 29 5.6
AY061435-1|AAL28983.1| 196|Drosophila melanogaster LD36256p pro... 29 5.6
AE014297-1355|AAF54679.1| 196|Drosophila melanogaster CG17358-P... 29 5.6
AE014297-1354|AAF54678.1| 196|Drosophila melanogaster CG17358-P... 29 5.6
AE014297-1353|AAF54677.1| 196|Drosophila melanogaster CG17358-P... 29 5.6
BT023491-1|AAY84891.1| 375|Drosophila melanogaster RE27783p pro... 29 7.5
AE014296-84|AAF47376.2| 565|Drosophila melanogaster CG32343-PA ... 29 7.5
AE014296-1968|AAN11874.2| 728|Drosophila melanogaster CG11711-P... 28 9.9
>BT022597-1|AAY55013.1| 182|Drosophila melanogaster IP06786p
protein.
Length = 182
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -2
Query: 140 IVFLSANLHMNHEK-LRINQLKKRRKSTSYLKLRLRI 33
I+ L++N+ + ++ RI +L+K + TSYL+ RLRI
Sbjct: 15 IIVLTSNITVQAKRTFRIQKLEKVTEDTSYLRSRLRI 51
>AE014297-1665|AAF54934.1| 183|Drosophila melanogaster CG14379-PA
protein.
Length = 183
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -2
Query: 140 IVFLSANLHMNHEK-LRINQLKKRRKSTSYLKLRLRI 33
I+ L++N+ + ++ RI +L+K + TSYL+ RLRI
Sbjct: 16 IIVLTSNITVQAKRTFRIQKLEKVTEDTSYLRSRLRI 52
>U06456-1|AAB19244.1| 196|Drosophila melanogaster transcription
initiation factorTFIID 28 kDa subunit protein.
Length = 196
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 185 TTFDKRSPFYHHIHHNEN 238
TTFD HH+HHN N
Sbjct: 6 TTFDSNGVAEHHLHHNHN 23
>AY061435-1|AAL28983.1| 196|Drosophila melanogaster LD36256p
protein.
Length = 196
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 185 TTFDKRSPFYHHIHHNEN 238
TTFD HH+HHN N
Sbjct: 6 TTFDSNGVAEHHLHHNHN 23
>AE014297-1355|AAF54679.1| 196|Drosophila melanogaster CG17358-PC,
isoform C protein.
Length = 196
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 185 TTFDKRSPFYHHIHHNEN 238
TTFD HH+HHN N
Sbjct: 6 TTFDSNGVAEHHLHHNHN 23
>AE014297-1354|AAF54678.1| 196|Drosophila melanogaster CG17358-PB,
isoform B protein.
Length = 196
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 185 TTFDKRSPFYHHIHHNEN 238
TTFD HH+HHN N
Sbjct: 6 TTFDSNGVAEHHLHHNHN 23
>AE014297-1353|AAF54677.1| 196|Drosophila melanogaster CG17358-PA,
isoform A protein.
Length = 196
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 185 TTFDKRSPFYHHIHHNEN 238
TTFD HH+HHN N
Sbjct: 6 TTFDSNGVAEHHLHHNHN 23
>BT023491-1|AAY84891.1| 375|Drosophila melanogaster RE27783p
protein.
Length = 375
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -2
Query: 299 DNSFYDTVIEASTLFRNGHQYFHCDGYGGKMVIVYRRS*CVQLRLYILLPSPCIVFLSAN 120
DN D+ +T +NG Q +G G+M++ +S + P + L N
Sbjct: 284 DNDDEDSKEMLNTALQNGRQLVLSEG--GRMLLHETKSGISGKQSTNGNARPSVAALRTN 341
Query: 119 LHMNHEKLRINQLKKR 72
++ +H K+R+N LK++
Sbjct: 342 VNNSHPKIRMNVLKQK 357
>AE014296-84|AAF47376.2| 565|Drosophila melanogaster CG32343-PA
protein.
Length = 565
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -2
Query: 299 DNSFYDTVIEASTLFRNGHQYFHCDGYGGKMVIVYRRS*CVQLRLYILLPSPCIVFLSAN 120
DN D+ +T +NG Q +G G+M++ +S + P + L N
Sbjct: 284 DNDDEDSKEMLNTALQNGRQLVLSEG--GRMLLHETKSGISGKQSTNGNARPSVAALRTN 341
Query: 119 LHMNHEKLRINQLKKR 72
++ +H K+R+N LK++
Sbjct: 342 VNNSHPKIRMNVLKQK 357
>AE014296-1968|AAN11874.2| 728|Drosophila melanogaster CG11711-PA,
isoform A protein.
Length = 728
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = -2
Query: 143 CIVFLSANLHMNHEKLRINQLKKRRKSTSY 54
C+++L+ L+ N E+L + + KK+++S+SY
Sbjct: 96 CLLYLATTLNSNSEQL-LKKSKKKKESSSY 124
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,908,517
Number of Sequences: 53049
Number of extensions: 524385
Number of successful extensions: 1124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -