Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d11
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z72510-3|CAA96653.1|  366|Caenorhabditis elegans Hypothetical
           protein F53B7.4 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 190 GRSAYNSAFIYSFLLLALCSSVLIY 116
           G  A N +FI  FL+L+LCS+ L Y
Sbjct: 199 GFFALNGSFIVFFLILSLCSAGLFY 223


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 149 SPCIVFLSANLHMNHEKLRINQLKKRRKSTSY 54
           SPC+ F+  + H  + K R++ LK+    T Y
Sbjct: 649 SPCVSFVKTDHHPKNNKERLDTLKRMIAHTQY 680


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 149  SPCIVFLSANLHMNHEKLRINQLKKRRKSTSY 54
            SPC+ F+  + H  + K R++ LK+    T Y
Sbjct: 1666 SPCVSFVKTDHHPKNNKERLDTLKRMIAHTQY 1697


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,714
Number of Sequences: 27780
Number of extensions: 290979
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)