Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d11
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 125 H*GTQCKEKEGVYKGGVVRTTTFDKRSPFYHHIHHNENIGAHFETRLKP 271
           H G   + + G++ G +V      K+ P Y    HN  +   FE+  +P
Sbjct: 576 HKGKPIRMRIGIHTG-MVLAGVVGKKMPRYCLFGHNVTLANKFESLSEP 623


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 488 RKMVCRIRIVLISVMLARH 544
           +K+  R+ +++ISV+ ARH
Sbjct: 634 KKVADRVSMLMISVITARH 652


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 PFYHHIHHNENIGAHFETR 262
           P Y+ +++NENI   F+++
Sbjct: 540 PSYNQLNYNENIERFFKSK 558


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 236 FHCDGYGGK 210
           F CDG+GGK
Sbjct: 609 FACDGWGGK 617


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 236 FHCDGYGGK 210
           F CDG+GGK
Sbjct: 647 FACDGWGGK 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,880
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)