Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d08
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0196 + 20835495-20837255                                         30   1.7  
03_06_0044 + 31255284-31256012                                         29   4.0  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   5.3  
05_01_0051 - 345125-345693,345833-346925                               28   7.0  
07_01_0249 - 1844894-1845363,1845557-1848158                           27   9.2  
03_06_0346 - 33287761-33287895,33288418-33288489,33288577-332886...    27   9.2  

>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -1

Query: 472 IKLYCRLGVLEQAQRRL-SGGA 410
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>03_06_0044 + 31255284-31256012
          Length = 242

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = -3

Query: 524 RRTAAS-WPHRNGPRRERN*------TLLSLGRLGAGSTPTVGRCTGATRVRKTNFAAPP 366
           RRTA   W  R   RR R+       T LS   +G G  P V    G TRV  +   A  
Sbjct: 57  RRTAGRIWRGRRSHRRRRHLDEAKTSTALSSSTIGGGGEPPVAGAAGETRVAGSEGGA-- 114

Query: 365 RWSSWSA*TTV*RLFCRVILFASA 294
            W   +A  T  ++    +L ASA
Sbjct: 115 -WRRRAAVATFTKVAPSALLTASA 137


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 396 CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTC 265
           C+   F SS AL+IL    N   P + S  + VC   G+  L C
Sbjct: 638 CNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLC 681


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 491 HFYAATTLLYAERNLF 538
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 467 TLLSLGRLGAGSTP-TVGRCTGATRVR 390
           TL++LG    G+ P ++G+CT  TRVR
Sbjct: 387 TLIALGNSLFGAIPASLGKCTSLTRVR 413


>03_06_0346 -
           33287761-33287895,33288418-33288489,33288577-33288645,
           33288782-33288847,33289025-33289228,33291194-33291445
          Length = 265

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 436 PAPRRPSDSKV*FRSRRGPFLCGHDAAVR-RKESVQDRPDYKLDAATGFSELXXXXXXXD 612
           P P  P    +  R+RRG     H  A R R+E + +R     D   G +++       D
Sbjct: 124 PPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLD 183

Query: 613 AV 618
            +
Sbjct: 184 EI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,931
Number of Sequences: 37544
Number of extensions: 363156
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)