Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6d07
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42366| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)                  29   2.5  
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_9939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_42366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 526 PSTQTRCKRWWRKKTEELFK 585
           PSTQ + KRWWR+  E + K
Sbjct: 115 PSTQNKIKRWWRELLERMEK 134


>SB_58057| Best HMM Match : RVT_1 (HMM E-Value=0.0085)
          Length = 576

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 378 SKLPYAIELQEWLLEEVIPQVLCTGKYDPAIKQQEEKNKQLVTKLIATFTEHTNALQAV 554
           +KLP     + + LE V+    C G Y   +   +EK ++    L +T+ + T A   V
Sbjct: 165 TKLPVGNPGKNFTLEAVVKIADCFGSYTTQVMATQEKCQEQNVDLYSTYVDLTKAFDTV 223


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173  VLGHKLDLRVSLLEHVPQRKRVLAEFELPD 84
            VLGH  ++R   LEH+P  +  L + E+PD
Sbjct: 951  VLGHDENIRTKSLEHLPADQE-LGQLEVPD 979


>SB_9939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 310 SPCFATLFGAEGGSLAPDSLYVYLYFLSTCLLTASLQFPYFKLL 179
           +P   T+  ++GG L    LY+  Y L TC+L    Q   F LL
Sbjct: 34  APLTTTILSSQGGRLRELQLYLSNYLLYTCVL-EKCQHKEFSLL 76


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 180 SSLKYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQG 308
           S+ ++GN       H    YK  +SE   R P   P S   +G
Sbjct: 831 SASRHGNQAPEAHHHEPGSYKSPHSEGSRRTPSGVPYSSGSEG 873


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 393 AIELQEWLLEEVIPQVLCTGKYDPAI 470
           AI + +W L+ VIP+ LCT K +  I
Sbjct: 420 AIPVDQWNLDYVIPKPLCTTKNNKCI 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,619
Number of Sequences: 59808
Number of extensions: 412156
Number of successful extensions: 1158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)